Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00899
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    28   1.7  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.0  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   6.8  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   9.0  

>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/44 (27%), Positives = 17/44 (38%)
 Frame = +1

Query: 352 CLALRCYGLRCHRTRRAQCECESSKCCTY*CPFGSSIADVHWRW 483
           C     YG+R H    A      +  CT+    G++     WRW
Sbjct: 335 CYKYSFYGIRSHLCMEATPSLACANKCTFCWRHGTNPVGTSWRW 378


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 316 PPCRSADDPICALAASATRSCSIGLSRPPLH 224
           PP  +  DP+  +++S++    +G   PP H
Sbjct: 157 PPISTLPDPVATISSSSSSHLDMGAIHPPHH 187


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +1

Query: 307 GREAELGSSDSTSLCCLALRCYGLRCHRTRRAQCECESSKCCTY*CPF 450
           G E + G     + CC      G  C  T+ + C+ +   CC Y C F
Sbjct: 326 GEECDCGEDCENNPCC-----DGKTCKLTKGSLCDDQQDACC-YQCHF 367


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 736 TTHRHIQTNLHAVRQQKTTTKNAL 665
           T H H++T L  + + K   KNAL
Sbjct: 582 TIHEHLETALQELERSKRIIKNAL 605


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,047
Number of Sequences: 5004
Number of extensions: 48916
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)