Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00899
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0385 - 43212580-43213142,43213234-43213612                       29   4.1  
08_02_0610 + 19307537-19308011,19308187-19310846                       28   7.1  
04_01_0317 + 4268418-4269446                                           28   7.1  

>01_07_0385 - 43212580-43213142,43213234-43213612
          Length = 313

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 301 ADDPICALAASATRSCSIGLSRPPLHIGTLSVRA 200
           A   + + AA+A R   +G+ +PPLH+     RA
Sbjct: 188 ASSVVVSAAAAAARRLPVGVRKPPLHVVVTGERA 221


>08_02_0610 + 19307537-19308011,19308187-19310846
          Length = 1044

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = -3

Query: 477  PMDISNARAKRASVSAAFTRFAFALGSTRPVTTQAVATECQTAQASRVATA 325
            P+    ARA   + +A     A   G T P TT A    C T++ASR  TA
Sbjct: 919  PLRAPQARAAAPACAARGAAAAATSGRTGPTTTTANPCTC-TSRASRTDTA 968


>04_01_0317 + 4268418-4269446
          Length = 342

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 486 LPSPMDISNARAKRASVSAAFTRFAFALGSTRPVTTQAVATEC 358
           +P+P D + A     S +A    FAFA+    P+   A    C
Sbjct: 298 MPAPCDDATAETTTTSSAATSPAFAFAVSDRSPLLVPAALVGC 340


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,215,946
Number of Sequences: 37544
Number of extensions: 371105
Number of successful extensions: 1053
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)