Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00899
         (767 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y09475-1|CAA70621.1|  282|Drosophila melanogaster boundary eleme...    29   9.3  
AY118353-1|AAM48382.1|  488|Drosophila melanogaster RE01052p pro...    29   9.3  
AY058711-1|AAL13940.1|  282|Drosophila melanogaster LD44361p pro...    29   9.3  
AE014134-3185|AAF53863.1|  470|Drosophila melanogaster CG13966-P...    29   9.3  
AE013599-1955|AAG22264.1|  282|Drosophila melanogaster CG10159-P...    29   9.3  

>Y09475-1|CAA70621.1|  282|Drosophila melanogaster boundary element
           associated factor protein.
          Length = 282

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 482 GNHSPTGGMSSDYKGNKKITRWQGRSAHARFNVLVKSV 595
           GN+   GGM+S+ KGN     W       R  VLV  V
Sbjct: 29  GNNISRGGMASNLKGNNTTNLWTHLRHKHRDEVLVSPV 66


>AY118353-1|AAM48382.1|  488|Drosophila melanogaster RE01052p
           protein.
          Length = 488

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 13/56 (23%), Positives = 24/56 (42%)
 Frame = +1

Query: 277 LKHRLDRLLTGREAELGSSDSTSLCCLALRCYGLRCHRTRRAQCECESSKCCTY*C 444
           L+H+L    +       S   +S  C + +C   RC   + +   C S++C +  C
Sbjct: 380 LRHQLRSRTSSHSNSCSSKSCSSNKCSSNKCSSNRCSSNKCSSNSCSSNRCSSNKC 435


>AY058711-1|AAL13940.1|  282|Drosophila melanogaster LD44361p
           protein.
          Length = 282

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 482 GNHSPTGGMSSDYKGNKKITRWQGRSAHARFNVLVKSV 595
           GN+   GGM+S+ KGN     W       R  VLV  V
Sbjct: 29  GNNISRGGMASNLKGNNTTNLWTHLRHKHRDEVLVSPV 66


>AE014134-3185|AAF53863.1|  470|Drosophila melanogaster CG13966-PA
           protein.
          Length = 470

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +2

Query: 62  ETMYRIPH-VEITTADAHYDDLCVSDVDDALLS--VRRCVDPYTPESADSPNAEGSDVEG 232
           ET+Y +    E TT  A   D   +  D AL S      +D  +P +AD    + S V+G
Sbjct: 292 ETVYSVEEDPEPTTDVAEKRDKFKNRSDKALSSSSTEGQIDAASPSTADKAK-DSSPVDG 350

Query: 233 RSTEPNRAGACRRRS*STD 289
            ST P R     +RS S D
Sbjct: 351 GSTIPRRQLGALKRSPSHD 369


>AE013599-1955|AAG22264.1|  282|Drosophila melanogaster CG10159-PB,
           isoform B protein.
          Length = 282

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 482 GNHSPTGGMSSDYKGNKKITRWQGRSAHARFNVLVKSV 595
           GN+   GGM+S+ KGN     W       R  VLV  V
Sbjct: 29  GNNISRGGMASNLKGNNTTNLWTHLRHKHRDEVLVSPV 66


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,147,224
Number of Sequences: 53049
Number of extensions: 621790
Number of successful extensions: 1675
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1673
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3540671772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)