Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00898
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0467 - 18479199-18479543,18481145-18481417                       44   8e-05
04_01_0542 - 7005972-7007443,7008568-7008766,7008780-7008855,700...    29   3.2  
04_03_0558 + 17111138-17111996,17112474-17112564,17112647-171132...    27   9.8  

>07_03_0467 - 18479199-18479543,18481145-18481417
          Length = 205

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 24/60 (40%), Positives = 39/60 (65%)
 Frame = +1

Query: 259 LAVLRPGVVTILENDGKQNKIFVSSGTITVNDDSSVQVLAEEAHPLESIDRSAAQEALSK 438
           +A L+PGV+++ E +    K FVSSG   V+ +S   ++A EA PL+ ID +A Q+ L++
Sbjct: 114 IAELKPGVLSVHEGNDI-TKYFVSSGFAFVHANSIADIVAVEAVPLDQIDPAAVQQGLAE 172


>04_01_0542 -
           7005972-7007443,7008568-7008766,7008780-7008855,
           7009615-7009925
          Length = 685

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +1

Query: 268 LRPGVVTILENDGKQNKIFVSS--GTITVNDDSSVQVLAEEAHPLESIDRSAAQEALSKA 441
           LR G VT    D + N   VS+  G +TV DDS+V+  AEE  P   +  S+ +  ++KA
Sbjct: 426 LRGGSVT----DSQLNSHCVSAIAGLLTVVDDSAVEQQAEEVLPTICV-ASSLETVMNKA 480

Query: 442 QSE 450
             E
Sbjct: 481 PEE 483


>04_03_0558 +
           17111138-17111996,17112474-17112564,17112647-17113268,
           17113378-17113457,17113871-17113937,17114138-17114263,
           17114333-17114415,17115334-17115777,17115834-17115927,
           17116038-17116124,17116474-17116594,17116671-17116709,
           17116828-17116997
          Length = 960

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -1

Query: 199 FDNLFVIKDLITRSEGQCHFVTFGSICIVTYLKPTSYISDYTTECQ 62
           FD + +      R E  C  +TFG   I    KP      +T+EC+
Sbjct: 591 FDRICLTNQRTNRYELHCQMITFGK-AICRKSKPNCGACPFTSECK 635


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,527,410
Number of Sequences: 37544
Number of extensions: 231063
Number of successful extensions: 454
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)