Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00896
         (762 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    42   0.017
UniRef50_A6W593 Cluster: Transcriptional regulator, TetR family;...    33   7.7  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 41.9 bits (94), Expect = 0.017
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +3

Query: 84  AGWWYLPVRTHKRSYHR 134
           A WWYLP RTHKRSYHR
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_A6W593 Cluster: Transcriptional regulator, TetR family;
           n=1; Kineococcus radiotolerans SRS30216|Rep:
           Transcriptional regulator, TetR family - Kineococcus
           radiotolerans SRS30216
          Length = 222

 Score = 33.1 bits (72), Expect = 7.7
 Identities = 17/33 (51%), Positives = 18/33 (54%)
 Frame = +1

Query: 25  LQRLPRPSNRNALLLHGRNRQGGGTYPCGLTRG 123
           L  LPRP  R A    G  R GGGT P G +RG
Sbjct: 189 LDGLPRPPGRAAGPARGTTRSGGGTRPGGGSRG 221


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 738,921,478
Number of Sequences: 1657284
Number of extensions: 14559739
Number of successful extensions: 27171
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27171
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63381147830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)