Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00896
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    26   5.1  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    26   6.7  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    25   8.9  

>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 227 RVQNEIGTNERVH*NCRDLLQPSTKSLT 310
           R++NE+ TNER+  + R+ L      LT
Sbjct: 142 RIKNELSTNERLDTSAREALVKQESELT 169


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 454 WNTYKANSKYI*LRKRIKPESYLTLV 377
           WN  K  SK+  L KRI   SY  LV
Sbjct: 51  WNDGKMKSKWYSLGKRISQPSYARLV 76


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 226 RLLAGARAMITHACYIFLLLR*VEELTTHFYRW 128
           +L+ G R  +T AC +   LR   EL  HF +W
Sbjct: 352 KLIVG-RDQLTKACGVTHKLRAFRELLIHFPKW 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,106,022
Number of Sequences: 5004
Number of extensions: 63319
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)