Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00896
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36719-4|CAA85315.2|  513|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z81061-2|CAB02931.1|  312|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>Z36719-4|CAA85315.2|  513|Caenorhabditis elegans Hypothetical
           protein C06C3.8 protein.
          Length = 513

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -3

Query: 466 SPALWNTYKANSKY 425
           SPA+WNTYKAN  Y
Sbjct: 271 SPAIWNTYKANGIY 284


>Z81061-2|CAB02931.1|  312|Caenorhabditis elegans Hypothetical
           protein F14H8.2 protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = -1

Query: 738 MVKANFSHTIYSFSRKSFLNMNRLSYI 658
           +++  ++ T+ + SRKSF+  NR++Y+
Sbjct: 95  LLRLKYNRTVRALSRKSFVLRNRMTYL 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,225,073
Number of Sequences: 27780
Number of extensions: 354707
Number of successful extensions: 654
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)