Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00896
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    26   0.44 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    26   0.44 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.1  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 429 NIFDSERESSRNPI*LWSTKNYTNMAIKFDLK*HSCVPKKVKDF 298
           N+F   RE+  N   L++  N++N     DLK  + VPKK+  F
Sbjct: 488 NVFAFSRETEDNGS-LYAILNFSNEEQIVDLKAFNNVPKKLNMF 530


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 429 NIFDSERESSRNPI*LWSTKNYTNMAIKFDLK*HSCVPKKVKDF 298
           N+F   RE+  N   L++  N++N     DLK  + VPKK+  F
Sbjct: 488 NVFAFSRETEDNGS-LYAILNFSNEEQIVDLKAFNNVPKKLNMF 530


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 28  QRLPRPSNRNALL-LHGRNRQGGGTYPCGLTR 120
           ++LP    ++ LL L+G NR+  G Y C + R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 28  QRLPRPSNRNALL-LHGRNRQGGGTYPCGLTR 120
           ++LP    ++ LL L+G NR+  G Y C + R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 610 RSTALARVRVSNVIKLE 560
           RSTA ARVR+  V +LE
Sbjct: 311 RSTAQARVRMQVVSQLE 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,187
Number of Sequences: 438
Number of extensions: 4202
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)