Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00895
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s...    30   0.29 
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   6.2  

>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
           subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 279

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = +3

Query: 237 IPVRPTSSSATSLQDFILPNM-GLQDITIQL-QNVTEPNPRNP 359
           IPV+    S+T+L+  I PN+ G+Q  TI L +  TE  P++P
Sbjct: 154 IPVKLKKHSSTNLRSIIRPNIEGVQIHTIHLPRPKTEDKPKDP 196


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 17  TTSLPSITAAAAGPSTCSCPRALKPACPS 103
           T S   ++ A++ PS CSCP ++K + PS
Sbjct: 301 TVSSGPLSTASSIPSNCSCP-SVKSSGPS 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,299,178
Number of Sequences: 5004
Number of extensions: 47014
Number of successful extensions: 102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)