Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00895
         (588 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,172...    29   2.1  
08_01_0897 - 8839134-8839718                                           29   3.6  
08_02_1101 - 24308433-24308978,24309195-24309364,24309443-243095...    27   8.4  

>12_01_0227 -
           1718726-1721183,1721804-1721957,1722090-1722165,
           1722327-1722485,1722552-1722662,1722791-1722841,
           1722948-1723192,1723745-1725278
          Length = 1595

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 20  TSLPSITAAAAGPSTCSCPRALKPACPSNCSLCYP 124
           T  PSI AAA GP        L+P  P+  ++ YP
Sbjct: 517 TVRPSIQAAAPGPRWLRLAATLRPISPATAAVRYP 551


>08_01_0897 - 8839134-8839718
          Length = 194

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 41  AAAAGPSTCSCPRALKPACPSNCSLCYPT 127
           A AAG S    P +L+P  PS  S+ +PT
Sbjct: 158 AVAAGGSPAPAPSSLRPRRPSGMSIKWPT 186


>08_02_1101 -
           24308433-24308978,24309195-24309364,24309443-24309542,
           24310337-24310500,24310960-24310996,24311222-24311262,
           24313877-24314093
          Length = 424

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 292 QTWACRTSLFNCKTSPNLTHGTLPCQ 369
           + W  R+S  +C  +P   +G LPC+
Sbjct: 69  EEWEGRSSSVDCPVTPRKMYGNLPCR 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,344,332
Number of Sequences: 37544
Number of extensions: 326744
Number of successful extensions: 921
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)