Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00894
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    27   1.6  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    27   2.2  
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    27   2.9  
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...    25   6.6  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    25   6.6  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    25   8.8  

>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 8   DGRSRSSTDKYPRIAAKVPGSLSANRIRR 94
           D  S S  D  P+   K PGSLS +R RR
Sbjct: 132 DLNSNSEHDLLPKSVNKTPGSLSISRRRR 160


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +3

Query: 267  FEIVKVDDITFWSKNSPSKLFKLMVSRLHEVLV 365
            FE  KV+D+  W+++S S++ K   + L+++ V
Sbjct: 1233 FEREKVEDVAHWAQSSLSEMAKCFHAELYKLWV 1265


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 428 IASDVPKEIVLSVPEIREFPANEDLVQARHHQLEQFRRTVLAPKRDVVNFDY 273
           IA D+P      V + R  P + D +  R   L++F RTV   K  +  +D+
Sbjct: 40  IALDIPNSTYQHVSKNRVPPTDGDGITKR---LKEFERTVTVNKDGIFRYDF 88


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 38  YPRIAAKVPGSLSANRIRRPPTKPTKSGRGVYPCRTRRGS 157
           Y R A +   S  A   R P    TK+ RG+ P +T RG+
Sbjct: 58  YLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGN 97


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 228 ERDRQLLHQTLFLFEIVKVDDITFWSKNSPSKLFKLMVSRLHEV 359
           E DR +L + + LF+ +  +++    + S SK FKL    L  +
Sbjct: 220 EEDR-VLSEKMELFQWITEENLDIKKQKSSSKFFKLAADELRRI 262


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 377 PLFLEPRAQSPLERQTQCTEQLRGEVEALNRDP 475
           P FL P AQS + R        R  ++ + RDP
Sbjct: 251 PDFLSPGAQSLIRRMIVADPMQRITIQEIRRDP 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,850
Number of Sequences: 5004
Number of extensions: 48019
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)