Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00894
(618 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1259 - 35810926-35811777 29 2.2
10_08_0249 + 16172811-16172987,16174048-16174299,16174426-161745... 29 3.0
06_03_0902 - 25806912-25807190,25807876-25808094,25809469-258097... 29 3.9
04_04_0159 - 23194738-23194914,23195035-23195190,23195581-23196570 29 3.9
04_04_0002 + 22082633-22083574,22083691-22084137,22084354-22084974 29 3.9
12_01_0019 - 135627-135983,136564-136797,137118-137196,137268-13... 27 9.0
11_01_0021 - 143576-143932,144434-144667,144988-145066,145138-14... 27 9.0
08_02_0956 + 23026108-23027146,23027255-23027395,23029334-230295... 27 9.0
03_02_0055 - 5295466-5295476,5295519-5296635,5296760-5296855,529... 27 9.0
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924... 27 9.0
>01_06_1259 - 35810926-35811777
Length = 283
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +2
Query: 11 GRSRSSTDKYPRIAAKVPGSLSANRIRRPPTKPTKSG 121
GR R YPR A +P + R RPP SG
Sbjct: 198 GRPRKDATMYPRKDATIPANTQPKRRGRPPKNRNLSG 234
>10_08_0249 +
16172811-16172987,16174048-16174299,16174426-16174505,
16174616-16174701,16174799-16174904,16174987-16175143,
16175220-16175315,16175797-16175845,16175946-16176205,
16176327-16176499,16176692-16176812,16176923-16176975,
16177088-16177217,16177371-16177516,16177887-16178075,
16178317-16178549,16178784-16178932,16179042-16179104
Length = 839
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 13 PITKQYRQIPPNCRKGTWQLVGKPNKEAANKT 108
P Y +I PN G +Q GK N+EA +T
Sbjct: 688 PHPNSYNRIQPNTWSGAYQCWGKENREAPLRT 719
>06_03_0902 -
25806912-25807190,25807876-25808094,25809469-25809711,
25809810-25809974,25810141-25810721,25810940-25811048,
25811158-25811250,25811474-25811535,25811895-25811967,
25812879-25813007,25814107-25814229
Length = 691
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 198 DEEVERRARHERDRQLLHQTLFLFEIVKVDDITFWSKNSPSKLFKLMVSRL 350
D EVE A ++D+++LHQ + L E K+ + W K+ + + M S L
Sbjct: 393 DLEVELEATKKKDKEILHQAV-LTEREKITQLQ-WDKDELYRKYSEMESNL 441
>04_04_0159 - 23194738-23194914,23195035-23195190,23195581-23196570
Length = 440
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 111 RSPVVAYIHAEPGEALDAQDQ*SATSLATDEEVERRA-RHERD 236
R+ V AE GEAL + S T L TD+E+ RR +H+ D
Sbjct: 262 RAAAVRVAPAEEGEALASLVTASITVLETDQELNRRMNKHKLD 304
>04_04_0002 + 22082633-22083574,22083691-22084137,22084354-22084974
Length = 669
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 80 NRIRRPPTKPTKSGRGVYPCRTRRGS*C 163
+R PP KP +G G P R RR S C
Sbjct: 78 HRAGNPPAKPFAAGAGDRPQRNRRSSRC 105
>12_01_0019 -
135627-135983,136564-136797,137118-137196,137268-137383,
137847-137991,138177-138594,138644-138649,139315-139945
Length = 661
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 213 SQLLHQSQGWSQIIGLVHQEPLLVLHGYT 127
S L +S GW Q + L+ Q+ +L YT
Sbjct: 256 SNLFSKSIGWKQFLSLMEQKEPTILRAYT 284
>11_01_0021 -
143576-143932,144434-144667,144988-145066,145138-145253,
145717-145861,146048-146465,147206-147869
Length = 670
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 213 SQLLHQSQGWSQIIGLVHQEPLLVLHGYT 127
S L +S GW Q + L+ Q+ +L YT
Sbjct: 265 SNLFSKSIGWKQFLSLMEQKEPTILRAYT 293
>08_02_0956 +
23026108-23027146,23027255-23027395,23029334-23029566,
23029652-23030989
Length = 916
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 156 EPLLVLHGYTPRPDFVGFVGGLLIRFADKLPGTFAAIRGY 37
EPLL HG+ R G +GG ++++ ++ T A Y
Sbjct: 286 EPLLPDHGFPVRAIIPGCIGGRMVKWVKRIIVTTAESDNY 325
>03_02_0055 -
5295466-5295476,5295519-5296635,5296760-5296855,
5297097-5297263,5297345-5297519,5297521-5297699,
5298004-5298109
Length = 616
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 425 ASDVPKEIVLSVPEIREFPANEDL 354
A+ +P + V + +IREFP N DL
Sbjct: 435 AAPLPTKYVAKLKQIREFPGNADL 458
>01_05_0346 +
21191542-21191783,21191988-21192072,21192159-21192422,
21192518-21192820,21193695-21193799,21193916-21194020,
21194613-21194712,21195614-21195933,21196183-21196359,
21196432-21196560,21196592-21196636,21196851-21197078
Length = 700
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 50 AAKVPGSLSANRIRRPPTKPTKSGRGVYPCRTRRGS*CTR 169
AA +P L A+R PP PT + C +RR C R
Sbjct: 4 AASLP--LPASRFLSPPPHPTPAAAAAAACCSRRNISCAR 41
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,134,061
Number of Sequences: 37544
Number of extensions: 333320
Number of successful extensions: 1162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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