Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00892
(764 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 172 4e-44
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 98 1e-21
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 93 3e-20
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 90 4e-19
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 63 4e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 58 1e-09
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 50 4e-07
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 41 2e-04
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 37 0.004
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.10
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 31 0.18
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 29 0.55
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.9
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.1
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 26 5.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 5.1
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual 26 5.1
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 26 5.1
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 6.8
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 6.8
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy... 25 9.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 172 bits (419), Expect = 4e-44
Identities = 77/83 (92%), Positives = 79/83 (95%)
Frame = +1
Query: 256 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 435
DEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+N
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSN 115
Query: 436 REKMTQIMFETFNTPAMYVAIQA 504
REKMTQI+FETFN PA YVAIQA
Sbjct: 116 REKMTQIIFETFNAPAFYVAIQA 138
Score = 126 bits (305), Expect = 3e-30
Identities = 58/63 (92%), Positives = 62/63 (98%)
Frame = +3
Query: 510 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 689
SLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F
Sbjct: 141 SLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTF 200
Query: 690 TTT 698
+TT
Sbjct: 201 STT 203
Score = 110 bits (265), Expect = 2e-25
Identities = 48/53 (90%), Positives = 52/53 (98%)
Frame = +2
Query: 95 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV 253
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYV
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYV 54
Score = 44.4 bits (100), Expect = 2e-05
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = +2
Query: 698 AEREIVRDIKEKLFYVALDFEQ 763
AEREIVRDIKEKL YVALDFEQ
Sbjct: 204 AEREIVRDIKEKLCYVALDFEQ 225
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 97.9 bits (233), Expect = 1e-21
Identities = 40/96 (41%), Positives = 67/96 (69%)
Frame = +1
Query: 217 RDGRYGTEGLLCRDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 396
+ G + ++ DEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 397 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQA 504
+LLTE P+NP ANREKM + MFE + +YVAIQA
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQA 138
Score = 82.2 bits (194), Expect = 7e-17
Identities = 35/63 (55%), Positives = 47/63 (74%)
Frame = +3
Query: 510 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 689
SLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F
Sbjct: 141 SLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAF 200
Query: 690 TTT 698
T
Sbjct: 201 NRT 203
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +2
Query: 101 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 205
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 698 AEREIVRDIKEKLFYVALDFE 760
A+ E VR++KEKL YV+ D E
Sbjct: 204 ADFETVREMKEKLCYVSYDLE 224
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 93.5 bits (222), Expect = 3e-20
Identities = 38/73 (52%), Positives = 49/73 (67%)
Frame = +1
Query: 286 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 465
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 466 TFNTPAMYVAIQA 504
+FN +Y+A+QA
Sbjct: 149 SFNCAGLYIAVQA 161
Score = 56.4 bits (130), Expect = 4e-09
Identities = 23/48 (47%), Positives = 35/48 (72%)
Frame = +3
Query: 534 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 677
TG V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDR 227
Score = 42.3 bits (95), Expect = 7e-05
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +2
Query: 113 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYV 253
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYM 55
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 89.8 bits (213), Expect = 4e-19
Identities = 39/82 (47%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Frame = +1
Query: 259 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKAN 435
EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N
Sbjct: 61 EAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRN 120
Query: 436 REKMTQIMFETFNTPAMYVAIQ 501
+EK+ + +ET N PA+ ++Q
Sbjct: 121 KEKIAEYFYETLNVPALSFSLQ 142
Score = 77.0 bits (181), Expect = 3e-15
Identities = 32/63 (50%), Positives = 49/63 (77%)
Frame = +3
Query: 510 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 689
+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+
Sbjct: 146 ALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHEL 205
Query: 690 TTT 698
++
Sbjct: 206 VSS 208
Score = 61.3 bits (142), Expect = 1e-10
Identities = 26/47 (55%), Positives = 34/47 (72%)
Frame = +2
Query: 113 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV 253
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +V
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFV 58
Score = 33.5 bits (73), Expect = 0.034
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +2
Query: 695 NAEREIVRDIKEKLFYVALDF 757
+AE+EIVR+IKEK YVA DF
Sbjct: 208 SAEKEIVREIKEKCCYVASDF 228
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 63.3 bits (147), Expect = 4e-11
Identities = 29/73 (39%), Positives = 41/73 (56%)
Frame = +1
Query: 283 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 462
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 463 ETFNTPAMYVAIQ 501
E+ PA Y+A Q
Sbjct: 123 ESLRCPATYLAKQ 135
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 98 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 199
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 30.7 bits (66), Expect = 0.24
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 516 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY 683
+ASG+ T ++D G S IY+G+ L +G + D L + L ++ +
Sbjct: 141 FASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQTLRDKNF 196
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 58.4 bits (135), Expect = 1e-09
Identities = 25/67 (37%), Positives = 41/67 (61%)
Frame = +1
Query: 298 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 477
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 478 PAMYVAI 498
P++ I
Sbjct: 145 PSVAYGI 151
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 113 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 208
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 35.5 bits (78), Expect = 0.008
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 531 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 689
++GIVL+ G+ SH +P+ G + R+ G + YL+K+ + SF
Sbjct: 165 SSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSF 217
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 50.0 bits (114), Expect = 4e-07
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = +1
Query: 307 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 486
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 487 YVAIQA 504
Y+ QA
Sbjct: 134 YLTKQA 139
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 98 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 199
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/49 (32%), Positives = 32/49 (65%)
Frame = +3
Query: 540 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS 686
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYN 207
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 36.7 bits (81), Expect = 0.004
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +3
Query: 513 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 674
LYA G G+V+D G + PI +G + A +L L GR +T +L +L E
Sbjct: 188 LYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHLQNLLRE 241
Score = 34.7 bits (76), Expect = 0.015
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +1
Query: 298 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 465
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 466 TFNTPAMYVAIQ 501
P +A +
Sbjct: 172 ECQVPGFTIAYE 183
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.10
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 358 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 501
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.1 bits (67), Expect = 0.18
Identities = 14/63 (22%), Positives = 32/63 (50%)
Frame = +3
Query: 501 SRASLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 680
S + + +G + V+D G + + EG +P++ ++++ G D+T MK+L
Sbjct: 281 SLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRSH 340
Query: 681 YSF 689
+ +
Sbjct: 341 FPY 343
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 29.5 bits (63), Expect = 0.55
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -3
Query: 330 IPVSDDSVFDGVFEGQDTSFALCLIST*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 151
+P + +V +TSFAL S S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 150 PALHIP 133
P L+ P
Sbjct: 123 PQLNSP 128
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 2.9
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = -3
Query: 252 T*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 94
T S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 402 TGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 400 LLTEAPLNPKANREKMTQIMFETFN 474
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 5.1
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +2
Query: 518 RVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRPHRLPHEDPH 670
R RS HR+ G RR P+R HL R RH + R R H
Sbjct: 142 RTRSNHRH--GSHRRHEPYRTHLSRHH---RHSTTNYHSKRDDRYERRREH 187
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 234 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 142
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 638 RPHRLPHEDPHRARLLVHYNAEREIVRDIKEKLFYVALDFEQ 763
RP + P DPH + L Y + +++ KE LD ++
Sbjct: 263 RPQKPPQIDPHSSSLADEYRESNKRLQESKESCARFILDCDR 304
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 650 LPHEDPHRARLLVHYNAEREIVRDIKEKL 736
LP P R + L Y E E++R+ EKL
Sbjct: 315 LPENHPQRRQTLEFYEIEIEVLREKVEKL 343
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +3
Query: 417 PQPQGQQREDDPDHVRNIQHARHVRRHPSRASLYASGRTTGIVLDSG 557
P GQ+ ++ Q ++H RR +AS +S TT + G
Sbjct: 488 PSSTGQEPTTPSTPAKSAQSSKHARRPSKQASAPSSPGTTSAAVPGG 534
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 254 LHKSPSVPYRPSRPDGGAFPRSRGTR 177
+ K+PS PY SRP A S TR
Sbjct: 310 ISKAPSYPYSSSRPSASASLASSPTR 335
>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 763 LLEVKSDVEQLLLDVTNDFPLGVVVNE*P 677
+++ SD Q++LD ND G+V E P
Sbjct: 59 IVDKGSDFPQVILDELNDLHTGIVYRETP 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,220,606
Number of Sequences: 5004
Number of extensions: 71097
Number of successful extensions: 242
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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