Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00891
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0105 + 16693771-16693780,16693833-16693876,16694274-166943... 30 2.3
03_06_0759 - 36059872-36059928,36059934-36060125,36060241-360603... 30 2.3
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497... 30 2.3
12_02_1119 + 26213719-26213955,26214039-26214197,26214640-262147... 29 4.1
06_03_1056 + 27239176-27242361 29 5.4
02_05_1113 + 34207997-34208380 29 5.4
03_02_0152 - 5951201-5951616,5952228-5952602,5955534-5955948 28 7.1
08_01_0946 + 9393206-9393547,9394495-9395078,9395410-9395890 28 9.4
>06_03_0105 +
16693771-16693780,16693833-16693876,16694274-16694348,
16694548-16694784,16694880-16695050,16695137-16695250
Length = 216
Score = 29.9 bits (64), Expect = 2.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 345 NWKCRCRPQTRRGSCWVF 292
N+ CRCRP+ RR W +
Sbjct: 5 NYVCRCRPENRRNKGWAY 22
>03_06_0759 -
36059872-36059928,36059934-36060125,36060241-36060348,
36060440-36060712,36060923-36061009,36061085-36061276,
36061841-36061969,36062087-36062200,36062446-36062490,
36062785-36062956,36063229-36063515,36063989-36064456
Length = 707
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +1
Query: 493 ISSVTCKNGLYYGAGYELPADLKTQTAFSTKMVFADATSINNHLYNLVTGGDYINAV 663
I S+T + LYY A +LP ++T+ + A S+ ++ NL+ G +IN++
Sbjct: 166 IDSLTVREMLYYSAHLQLPGLFSSKTSIVEDAI--AAMSLADYADNLIGGHCFINSL 220
>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
18449864-18449959,18452287-18452447,18452669-18452790,
18452872-18453239,18453653-18453739,18453835-18453969,
18454349-18454471,18454771-18454854,18455023-18455187,
18455310-18455486,18455660-18455773,18455912-18456016,
18457056-18457174,18457244-18457385,18457461-18457555,
18457757-18457862,18458125-18458204,18458285-18458461,
18459828-18459912,18460024-18460104,18460208-18460351,
18460468-18460563,18460654-18460854,18461462-18461895,
18462417-18462478,18462622-18462872,18462956-18463030,
18463110-18463300,18463696-18463867,18463956-18464020,
18464646-18464778,18464861-18464962,18465047-18465130,
18465656-18465730,18465818-18465877,18465967-18466223,
18466560-18466608,18466781-18466941,18467013-18467079,
18467174-18467299,18467422-18467592,18468566-18468769,
18469059-18469165,18469608-18469737,18469774-18469959,
18470704-18470742
Length = 2202
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 330 CRPQTRRGSCWVFAFPRCG-PY*RAQM 253
CR T +G W A P+CG PY R QM
Sbjct: 2096 CRDSTLQGQEWRCAVPQCGQPYHREQM 2122
>12_02_1119 +
26213719-26213955,26214039-26214197,26214640-26214702,
26214813-26214902,26214984-26215106,26215344-26215431,
26217043-26217117,26218109-26218215
Length = 313
Score = 29.1 bits (62), Expect = 4.1
Identities = 25/111 (22%), Positives = 44/111 (39%)
Frame = +1
Query: 286 ESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPKDSSLPTD 465
+S + G+P T T V S + +PS GR + GA+QT +++ L
Sbjct: 206 QSCFAIGNPYGYEHTLTTGVVSGL--GREIPSPNGRPIRGAIQTDAAINSGNSGGPLIDS 263
Query: 466 ILKILTTFKISSVTCKNGLYYGAGYELPADLKTQTAFSTKMVFADATSINN 618
++ + G+ G + +P D Q S + TS++N
Sbjct: 264 YGHVIGVNTATFTRKGTGISSGVNFAIPIDTVVQ---SVPNLIVYGTSVSN 311
>06_03_1056 + 27239176-27242361
Length = 1061
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 196 FFSPVIDMVYQPSVDRDLHEVVHTEVGYW 110
F + V D + S+DR LH HTE G W
Sbjct: 810 FRALVFDFMPNYSLDRWLHRAKHTETGKW 838
>02_05_1113 + 34207997-34208380
Length = 127
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 528 WSRVRTARRLEDPDGIQHEDGLCRRNVNQQP 620
W R RTARR DG E+G C R + P
Sbjct: 45 WRRSRTARRTPVADGDGSEEGGCGRGRRRGP 75
>03_02_0152 - 5951201-5951616,5952228-5952602,5955534-5955948
Length = 401
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = +1
Query: 262 SSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKL--LPSARGRSLSGALQTSPGLST 435
SSV A P+ PS L+ T++LP + A+K + R SG + P +
Sbjct: 59 SSVAAILAAPTEPSAPPSGLFRTSSLPTVAAAEAAKKQGVDELNCRRPSGGAEAEPAAAR 118
Query: 436 RPKDSS 453
P S
Sbjct: 119 LPASGS 124
>08_01_0946 + 9393206-9393547,9394495-9395078,9395410-9395890
Length = 468
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -2
Query: 572 AVWVFKSAGSSYPAP*YKPFLQVTLEIL-NVVRIFRISVGNDESFGRVDNPGDVCSA 405
AVWV +AG++Y P Y P ++ L + + ++ E+FG V G +C++
Sbjct: 24 AVWVQMAAGNAYTFPLYSPAIKAALGYTQQQLAVLGVAKDVGENFGVV--AGVLCNS 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,232,387
Number of Sequences: 37544
Number of extensions: 392934
Number of successful extensions: 1070
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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