Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00891
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   2.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   3.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   4.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.2  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 217 IRGFPRSYNVNEHLRSSVRATTRESKYPTGSP--SCLWTTATL 339
           I+G P  Y +N+ L S +  T+ E + P  +P  S  WT   L
Sbjct: 487 IQGLPPPYRLNKPLMSLI--TSSEVRQPGKAPNYSVNWTIGQL 527


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 175 MVYQPSVDRDLHEVVHTEV 119
           +VY+PS  R  HE+  T+V
Sbjct: 515 LVYEPSACRPRHEIRSTDV 533


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 381 STGPITKRCAADVARIVNASEGLVVAYGYSENSD 482
           +T PIT RC  +  +I +     VVA G + N D
Sbjct: 365 ATLPITFRCLEENNKIDSRVTRFVVAVGATVNMD 398


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -3

Query: 160 SVDRDLHEVVHTEVGYWGVRIQQVLICVVVWLRGG 56
           S+DR +H       G W  R   V    VVWL  G
Sbjct: 120 SLDRYIHIKDPLRYGRWVTRRIAVAGIAVVWLLAG 154


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 199 VTNLDKIRGFPRSYNVNEHLRSSVRATTRE 288
           +T L  +R F  SYN  + L   + A+TR+
Sbjct: 257 LTGLTVLRTFNASYNSLDSLPEGLFASTRD 286


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 256 LRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLL 375
           L     +T+  +   T + +   TTAT   T+ TTA+ L+
Sbjct: 94  LHPPASSTSLPATITTTTTTTTTTTATAAATATTTATGLI 133



 Score = 21.8 bits (44), Expect = 7.2
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +1

Query: 328 TATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRP 441
           T TLP  S T      PSA   + +     + G +T P
Sbjct: 225 TTTLPAASATGTGPATPSAVVATSNATAAMTTGTTTIP 262


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,049
Number of Sequences: 438
Number of extensions: 3722
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)