Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00890
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0007 - 2916775-2916942,2917035-2917232                           30   1.6  
01_06_1627 + 38742294-38742746,38742831-38743120,38743544-38744027     29   2.8  
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548...    29   3.7  
02_02_0316 - 8878540-8878605,8880040-8880732,8881270-8881758           29   3.7  
06_01_0138 - 1051408-1051625,1052790-1052889,1053724-1054085,105...    29   4.9  
03_01_0608 + 4471738-4472115                                           28   6.5  
10_08_0642 - 19525774-19526554,19526657-19527075                       28   8.6  
08_02_1014 - 23586552-23587224,23587402-23587463,23587735-235879...    28   8.6  

>09_02_0007 - 2916775-2916942,2917035-2917232
          Length = 121

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 670 QVHVAEHPVRVQRVRLSAGRLHGHGPHLHALVLELRSG 557
           +V   +HP R  R+  S   +H   P LHA+ LE R+G
Sbjct: 2   KVQRPQHPYRCMRLFGSQLGMHPDRPKLHAIALESRAG 39


>01_06_1627 + 38742294-38742746,38742831-38743120,38743544-38744027
          Length = 408

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 569 LENQGVQVRSVSVETPGGQPNT 634
           L+++GV VR V+VE P   PNT
Sbjct: 179 LQSRGVTVRRVTVEAPADSPNT 200


>06_03_1508 -
           30653967-30654245,30654342-30654631,30654773-30654841,
           30654854-30654921,30655016-30655492,30655578-30655874,
           30655974-30656824,30656917-30656990,30657270-30657292,
           30657709-30657772,30658098-30658370,30658511-30658587,
           30658686-30658912
          Length = 1022

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
 Frame = -3

Query: 482 WIAHRCGLISDNTKLFKVSVF-RVVH------VRGETVPVVVYRTIQFSVR-REGAGLQH 327
           W   RC L +D +K  KV V  RV+       VR   V  V  R I    R R   GL+ 
Sbjct: 524 WFNARCRLSADMSKADKVLVVERVIEALGLQAVRDSLVGTVEQRGISGGQRKRVNVGLEM 583

Query: 326 VAERIDVKRPSLPVWQSNGTSRDSSSTFLLQRSI 225
           V E      PS+ +     +  DSSS+ LL R++
Sbjct: 584 VME------PSVLILDEPTSGLDSSSSLLLLRAL 611


>02_02_0316 - 8878540-8878605,8880040-8880732,8881270-8881758
          Length = 415

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 319 SATCWSPAPSRRTENCMVRYTTTGTVSPRTCTTRNTDTLNNL 444
           +AT   P P+  T +C V Y+ +  ++P + ++  T T + L
Sbjct: 252 AATARPPHPAAATSSCSVAYSMSPAMTPTSSSSTTTTTTHEL 293


>06_01_0138 -
           1051408-1051625,1052790-1052889,1053724-1054085,
           1055055-1055079
          Length = 234

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/68 (29%), Positives = 29/68 (42%)
 Frame = -1

Query: 418 GSCMYAVKLCPLLCIEPYSSLFGERALDSNMLPSVSMSRGRVCPFGNLTVPVAIALPRFF 239
           G+ +Y   LCP     P ++ F    +   M  +V+            TVP A A     
Sbjct: 166 GNLLYI--LCPAFSAVPSAASFSAFRIVPAMATTVAFPAMATVAPATATVPAA-ATDTMG 222

Query: 238 SSVPFRQW 215
           ++VPFRQW
Sbjct: 223 ATVPFRQW 230


>03_01_0608 + 4471738-4472115
          Length = 125

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +2

Query: 32  FNCERLCNSLKRVKKFSNW-REPIPE 106
           F CER+C S + +KK   + ++PIPE
Sbjct: 48  FVCERVCTSKRMLKKVGAFSKDPIPE 73


>10_08_0642 - 19525774-19526554,19526657-19527075
          Length = 399

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 164 SGMQWQDLNRAAEVYL*PLTKWNAGEETWK 253
           +G+Q Q L   AEVY  P  +W A  E W+
Sbjct: 196 AGVQVQWLPSFAEVYKPPAAEWTAPAERWQ 225


>08_02_1014 -
           23586552-23587224,23587402-23587463,23587735-23587950,
           23588125-23588209,23589232-23589389,23589505-23589625,
           23590081-23590243,23590330-23590415,23590660-23590742,
           23590816-23591677,23593266-23593693
          Length = 978

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -1

Query: 679 SARQVHVAEHPVRVQR--VRLSAGRLHGHGP 593
           S R   +A+ P RV++   R+++GR HG GP
Sbjct: 763 SVRPALMAQDPARVKKDKARVNSGRWHGGGP 793


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,179,024
Number of Sequences: 37544
Number of extensions: 520082
Number of successful extensions: 1636
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1636
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)