Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00890
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100656-10|AAF99967.1|  301|Caenorhabditis elegans Hypothetical...    31   0.63 
AL132952-1|CAB61134.2|  214|Caenorhabditis elegans Hypothetical ...    31   0.83 
Z48621-5|CAA88543.1|  136|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF039039-1|AAB94180.2|  653|Caenorhabditis elegans Hypothetical ...    29   3.4  
AF040649-5|AAK72086.3|  327|Caenorhabditis elegans Serpentine re...    29   4.4  
AF016664-3|AAB66069.2|  315|Caenorhabditis elegans Serpentine re...    29   4.4  
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p...    28   7.8  
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p...    28   7.8  
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane...    28   7.8  
AF016423-5|AAB65320.1|  230|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AF100656-10|AAF99967.1|  301|Caenorhabditis elegans Hypothetical
           protein F49F1.11 protein.
          Length = 301

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 608 ETPGGQPNTLNTYWMLSDVNLSRGLDFSDNGPVYARFTH 724
           ET GG P   NTY+ ++ VN    ++   NG  +  F H
Sbjct: 163 ETYGGNPFRANTYFNVTMVNQPTHIEIHVNGAFFVNFNH 201


>AL132952-1|CAB61134.2|  214|Caenorhabditis elegans Hypothetical
           protein Y51H4A.1 protein.
          Length = 214

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 16/63 (25%), Positives = 33/63 (52%)
 Frame = +2

Query: 515 VFQKHKESAYVRPYTRSELENQGVQVRSVSVETPGGQPNTLNTYWMLSDVNLSRGLDFSD 694
           V + H E+A V  Y   E++ +  +V   + +TP G P + ++  + S++   + ++FS 
Sbjct: 70  VIELHTEAAPVENYLEEEIQIKVPEVEEDTEKTPAGSPKSTSS-CISSEILSEQSIEFSS 128

Query: 695 NGP 703
             P
Sbjct: 129 ISP 131


>Z48621-5|CAA88543.1|  136|Caenorhabditis elegans Hypothetical
           protein R07B1.6 protein.
          Length = 136

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 349 RRTENCMVRY-TTTGTVSPRTCTTRNTDTL 435
           R T++C     TTT T++P TCTT  TD +
Sbjct: 16  RITDSCAATSGTTTTTIAPTTCTTCTTDLI 45


>AF039039-1|AAB94180.2|  653|Caenorhabditis elegans Hypothetical
           protein T08B1.6 protein.
          Length = 653

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 327 MLESSALSPNRELYGSIHNNGHSFTAYMHDPEHRYLEQFGVIA 455
           +  S+ L+PN  L+G   N  H +T Y    E   +   G++A
Sbjct: 48  LTRSAQLNPNAPLFGESVNGRHVYTTYREAVEEATIIGSGIVA 90


>AF040649-5|AAK72086.3|  327|Caenorhabditis elegans Serpentine
           receptor, class i protein39 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -3

Query: 323 AERIDVKRPSLPVWQSNGTSRDSSSTFLLQ 234
           +E+IDV R SL V+Q+  T  D   TFL+Q
Sbjct: 37  SEKIDVFRKSLLVFQATCTVTDIHFTFLMQ 66


>AF016664-3|AAB66069.2|  315|Caenorhabditis elegans Serpentine
           receptor, class i protein38 protein.
          Length = 315

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -3

Query: 323 AERIDVKRPSLPVWQSNGTSRDSSSTFLLQ 234
           +E+IDV R SL V+Q+  T  D   TFL+Q
Sbjct: 37  SEKIDVFRKSLLVFQATCTVTDIHFTFLMQ 66


>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical protein
            F26H11.2c protein.
          Length = 2266

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 315  TLGNMLESSALSPNRELYGSIHNNGHSFTA-YMHDPEHRYLEQFGVIADE 461
            T G    S   +PNR+ Y  +  NG+  +A   HD   R LE+ GV+ +E
Sbjct: 961  TNGCYSPSCRSNPNRKCYSPMCRNGYLVSAKQAHD--ERKLEESGVLGEE 1008


>Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical protein
            F26H11.2b protein.
          Length = 1693

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 315  TLGNMLESSALSPNRELYGSIHNNGHSFTA-YMHDPEHRYLEQFGVIADE 461
            T G    S   +PNR+ Y  +  NG+  +A   HD   R LE+ GV+ +E
Sbjct: 961  TNGCYSPSCRSNPNRKCYSPMCRNGYLVSAKQAHD--ERKLEESGVLGEE 1008


>Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical protein
            F26H11.2a protein.
          Length = 1691

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 315  TLGNMLESSALSPNRELYGSIHNNGHSFTA-YMHDPEHRYLEQFGVIADE 461
            T G    S   +PNR+ Y  +  NG+  +A   HD   R LE+ GV+ +E
Sbjct: 961  TNGCYSPSCRSNPNRKCYSPMCRNGYLVSAKQAHD--ERKLEESGVLGEE 1008


>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
            K08E5.3b protein.
          Length = 3183

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/50 (34%), Positives = 18/50 (36%)
 Frame = +3

Query: 558  PDLSSRTRACK*GPCPWRRPADNRTR*TRTGCSAT*TCRADSTSPTTGPC 707
            PD S R R C+  P P   P        R  C    TCRA      T  C
Sbjct: 1910 PDSSQRGRVCEPPPPPSPPPRHPCQDPERNDCHPAGTCRATGAQSYTCEC 1959


>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
            K08E5.3a protein.
          Length = 3767

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/50 (34%), Positives = 18/50 (36%)
 Frame = +3

Query: 558  PDLSSRTRACK*GPCPWRRPADNRTR*TRTGCSAT*TCRADSTSPTTGPC 707
            PD S R R C+  P P   P        R  C    TCRA      T  C
Sbjct: 2494 PDSSQRGRVCEPPPPPSPPPRHPCQDPERNDCHPAGTCRATGAQSYTCEC 2543


>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
            protein K08E5.3b protein.
          Length = 3183

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/50 (34%), Positives = 18/50 (36%)
 Frame = +3

Query: 558  PDLSSRTRACK*GPCPWRRPADNRTR*TRTGCSAT*TCRADSTSPTTGPC 707
            PD S R R C+  P P   P        R  C    TCRA      T  C
Sbjct: 1910 PDSSQRGRVCEPPPPPSPPPRHPCQDPERNDCHPAGTCRATGAQSYTCEC 1959


>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
            protein K08E5.3a protein.
          Length = 3767

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/50 (34%), Positives = 18/50 (36%)
 Frame = +3

Query: 558  PDLSSRTRACK*GPCPWRRPADNRTR*TRTGCSAT*TCRADSTSPTTGPC 707
            PD S R R C+  P P   P        R  C    TCRA      T  C
Sbjct: 2494 PDSSQRGRVCEPPPPPSPPPRHPCQDPERNDCHPAGTCRATGAQSYTCEC 2543


>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
            adhesion receptorMUA-3 precursor protein.
          Length = 3767

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/50 (34%), Positives = 18/50 (36%)
 Frame = +3

Query: 558  PDLSSRTRACK*GPCPWRRPADNRTR*TRTGCSAT*TCRADSTSPTTGPC 707
            PD S R R C+  P P   P        R  C    TCRA      T  C
Sbjct: 2494 PDSSQRGRVCEPPPPPSPPPRHPCQDPERNDCHPAGTCRATGAQSYTCEC 2543


>AF016423-5|AAB65320.1|  230|Caenorhabditis elegans Hypothetical
           protein F40A3.2 protein.
          Length = 230

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = -1

Query: 496 QR*KNGSRIVVASSAITPNCSRYLCSGSCMYAVKLCPLLCIEPYSSLFGERALDSNMLPS 317
           +R +NGS I         +C    C G+ M    L    C  PYS  + E A   ++   
Sbjct: 56  ERLQNGSCIECELGWAGTDCDIIDCHGNGMPNYDLTECTCTVPYSGKYCEIADTKDIYKW 115

Query: 316 VSMSRGRVCPFGNLT-VPVAI 257
            +     + P G LT +P+A+
Sbjct: 116 YNNFTSSIGPIGILTIIPLAL 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,955,342
Number of Sequences: 27780
Number of extensions: 409982
Number of successful extensions: 1294
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)