Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00889
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    30   0.32 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.9  
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    26   5.2  
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe...    26   6.8  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   9.0  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   9.0  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    25   9.0  

>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 268 TTPSRIPMRKVTNTKTSIARAAANASKLGVSTPNGSR-PRTPTGYLTPASGRS 423
           ++ S+  + K +  +   +  A+  S +G++T +G + PRTP G  TP S  S
Sbjct: 109 SSDSKEAITKESGAELESSEPASTNSNVGMTTRSGRQSPRTPIGSTTPKSSHS 161


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 2/96 (2%)
 Frame = +2

Query: 95  SDNEAASGLGTRYRKPSVPRSTLTPGTSRPGSRAGSRAGS--KPPSRHGSNLSLDIQTMR 268
           S   +A+ L    ++P  P         +P    GS   S   PP    SN +  I    
Sbjct: 296 SSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355

Query: 269 QRRPAFP*GKSRIRRLRSRVLPPMQASLGLARRTAP 376
           Q R A P    R      R  PP+ +S  ++   AP
Sbjct: 356 QGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAP 391


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 1/87 (1%)
 Frame = +1

Query: 238 KFILGYTDDATTPSRIPMRKVTNTKTSIARAAANASK-LGVSTPNGSRPRTPTGYLTPAS 414
           K +   ++ AT    +P        +   +   N  K +    P+ S   TPT   + ++
Sbjct: 428 KSLSDISNSATKNENVPFLPPRTGVSKYFKLQKNTEKEIDEQVPSQSNNTTPTSAKSDSA 487

Query: 415 GRSGSFTSNDLQTPGRSRIPVLKDQHT 495
                F+S   QTP  +  P     HT
Sbjct: 488 SPQNWFSSFSYQTPNSASPPFSSLSHT 514


>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/68 (17%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +1

Query: 124 NKIQEAQRSEVHFDTGNISTRFSSWIEG--RIKTPFETWIKFILGYTDDATTPSRIPMRK 297
           +++++    E+H    ++   F  ++    R+K  +   I  ++G   +   P  + + K
Sbjct: 44  DRVEDLYPEELHLQPEDLFKTFDEYVNEARRLKQNYGDQINILIGAETEYIRPESVELLK 103

Query: 298 VTNTKTSI 321
             NTK ++
Sbjct: 104 SLNTKYNL 111


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/77 (19%), Positives = 30/77 (38%)
 Frame = +1

Query: 178 STRFSSWIEGRIKTPFETWIKFILGYTDDATTPSRIPMRKVTNTKTSIARAAANASKLGV 357
           +T F  + +G   + F  +  + +  T+D    S IP+  +      +    A    +  
Sbjct: 149 TTDFVGYEQGNSSSKFVQFTSYAIPATNDVCNASGIPLGMIVQPFAELRPDEAPVPVVDN 208

Query: 358 STPNGSRPRTPTGYLTP 408
           +  N  R +   GY+ P
Sbjct: 209 TNSNPPRCKKCRGYINP 225


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 337 NASKLGVSTPNGSRPRTPTGYLTPASGRSGSFTSNDLQTPGRSR 468
           N+   GVS  NG+   T +    P    SG FTSN++ T    R
Sbjct: 65  NSYSNGVSLSNGTLLSTSS----PLISTSGQFTSNNVSTTSSQR 104


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 142 GLPVSCSKSARRFVITERVWCSCTQRRSGSATGAPAPADIGTD 14
           G  V  ++  R+ VITERV  +  +R+     G  A  + G D
Sbjct: 43  GKKVKVTRVIRKTVITERVQHAVAERKKWKKFGKEAGKNSGVD 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,390
Number of Sequences: 5004
Number of extensions: 59296
Number of successful extensions: 213
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)