Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00888
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo...    25   7.4  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    25   9.7  
SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces ...    25   9.7  
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||...    25   9.7  

>SPCC1020.03 |||mitochondrial iron ion
           transporter|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 84  THYERNHNIKRFMYATPFTAEGRAHGDIV 170
           TH   +HN  + ++  PF A G   G +V
Sbjct: 182 THIGHSHNPSQLLFEHPFMALGLIFGSVV 210


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 526 KKNKNLIGLDQREYQRELQRNLQHLAASLQPL 621
           K+ KNLI   +   Q+ +Q N+  + +  QPL
Sbjct: 269 KRIKNLITTTEDSLQQSVQSNIDFVNSGFQPL 300


>SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 180 KRKTILTTAHHFPYVKTRIQXVQK 251
           K+K +L  AH F + K RIQ +++
Sbjct: 224 KKKALLDLAHKFEFDKQRIQQLKE 247


>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +3

Query: 99  NHNIKRFMYATPFTAEG-RAHGDIVD 173
           N  +KR  Y  PF AEG R H  IV+
Sbjct: 21  NIPLKRISYTDPFLAEGYRIHETIVN 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.128    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,698,937
Number of Sequences: 5004
Number of extensions: 24179
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)