Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00888
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653...    56   3e-08
05_04_0199 + 18980017-18980759,18981478-18981532                       29   2.5  
02_05_0071 + 25595374-25595422,25595526-25595596,25596531-255965...    29   4.4  

>03_02_0870 + 11964135-11964224,11965013-11965175,11965262-11965380,
            11965971-11966083,11966179-11966234,11966320-11966417,
            11966588-11966725,11966820-11967125,11967208-11967471,
            11967587-11967754,11967838-11968056,11968115-11968158,
            11968761-11968830,11968949-11969110,11969672-11969779,
            11969873-11969910,11970121-11970265,11970800-11970926,
            11971037-11971230,11971529-11971659,11972014-11972089,
            11972218-11972328,11972465-11972647,11973264-11973407,
            11973946-11973969,11974555-11974728,11974808-11975155,
            11975232-11975561,11975776-11975961,11976052-11977026,
            11977145-11977399
          Length = 1852

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
 Frame = +3

Query: 6    LDPDKAYIQITYVEPYFEPHEL---RRRL----THYERNHNIKRFMYATPFTAEGRAHGD 164
            L P   Y+QIT V+P  E  +L   R R+    T   R     RF++ TPFT  G+  G 
Sbjct: 1626 LQPGVCYLQITAVDPVMEDEDLGSRRERIFSLSTGTVRARVFDRFLFDTPFTKNGKTQGG 1685

Query: 165  IVDQCKRKTILTTAHHFPYVKTRIQXVQ 248
            + DQ KR+T+L T   FP +  R+  ++
Sbjct: 1686 LEDQWKRRTVLQTEGSFPALVNRLLVIK 1713



 Score = 31.5 bits (68), Expect = 0.62
 Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
 Frame = +2

Query: 266  SPIEVAIEDIQKKVA----ELSAATSAEPADA---KMLQMVLQGCVTTTVNQGPLELAQV 424
            SP+E AI  I+ + A    EL    S+E       + LQ +LQG V   VN G L +   
Sbjct: 1720 SPVENAIGMIETRTAALRNELEEPRSSEGDQLPRLQSLQRILQGSVAVQVNSGVLSVCTA 1779

Query: 425  FLAPVADGTQPPTRLTNK 478
            FL+      +P TRL ++
Sbjct: 1780 FLS-----GEPATRLRSQ 1792


>05_04_0199 + 18980017-18980759,18981478-18981532
          Length = 265

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 577 LQRNLQHLAASLQPLLQHPPSHAALLS 657
           L  +L H++ SL PLL  PP+ AAL S
Sbjct: 87  LASSLAHVSRSLTPLLASPPAAAALAS 113


>02_05_0071 +
           25595374-25595422,25595526-25595596,25596531-25596579,
           25597026-25597098,25597175-25597466
          Length = 177

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +2

Query: 35  HVRGAVLRASRTPEAPHALRAEPQ 106
           H RGA+L A  TP  P ALR EP+
Sbjct: 53  HGRGAIL-ADSTPAVPAALRVEPK 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.128    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,162,291
Number of Sequences: 37544
Number of extensions: 215692
Number of successful extensions: 681
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)