Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00887
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    28   1.7  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    27   2.2  
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    27   2.2  
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc...    26   5.2  
SPAC3A12.04c |||RNase P and RNase MRP subunit p30 |Schizosacchar...    26   6.8  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    25   9.0  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   9.0  

>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -1

Query: 525 KPDGFPPPNRSRVSGNMIGTKHFRDPWSLGAGPRRPRT 412
           K  G PPPNR   +G ++ T+ +R P  L  G RR  T
Sbjct: 199 KNPGLPPPNRREYTGCVV-TRWYRSP-ELLLGERRYTT 234


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 504 EGGIRPVLTTSSRTREPRNECSRSKGSEMSALDKSI 611
           EGG+RP  T     R   +  S SK +E S +D  I
Sbjct: 313 EGGLRPANTIDGIVRSSLSSSSLSKDTEPSTVDMHI 348


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +1

Query: 295 GRPRTVATIYHGISTTGSVGSRRKTSQEPPQSSPLAWTTSSGAPRSSTERPWVT--KVLC 468
           G P       +G++T   +GS   T    P +SPL  T S    RSS+   WV   K+  
Sbjct: 205 GSPTKSIYDQNGLTTPRPIGSDDLTHMYDPYTSPLR-TPSRTLSRSSSHYLWVRHGKLTR 263

Query: 469 SYHISRHP*P 498
           S  + +H  P
Sbjct: 264 SVSLLQHKTP 273


>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +2

Query: 587 DVRVRQVDPQIASMNKGDCFVLSLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHH 757
           D R+ QV+    ++ +G   +    N+  V +G + KNV KL+ +S   ++   D+H
Sbjct: 14  DGRLLQVEYGQEAVRRGTTAIALRGNECIV-IGVERKNVPKLQNVSNFQKIAMVDNH 69


>SPAC3A12.04c |||RNase P and RNase MRP subunit p30
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 622 SYLRIDLSNADIS--LPFDLEHSFLGSRVRDDV 530
           S L  D+ + D +  LPF L+H+F+G  V  D+
Sbjct: 106 SDLEFDILSIDFTQRLPFYLKHTFMGLAVSRDI 138


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 340 TGSVGSRRKTSQEPPQSSPLAWTTSSGAPRSSTER 444
           TG V S         +S PL+ + +SG PR+S  R
Sbjct: 470 TGDVKSFDSQESNIIESEPLSASNASGKPRTSVNR 504


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 307 TVATIYHGISTTGSVGSRRKTSQEPPQSSPLAWTTSSGAPRSSTE 441
           T +T Y   S+T SV ++   S     S+P++ T+SS +   S++
Sbjct: 249 TESTFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQ 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,351,194
Number of Sequences: 5004
Number of extensions: 76297
Number of successful extensions: 243
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)