Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00885
         (357 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719...   124   2e-29
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460...    50   4e-07
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590     48   2e-06
12_01_0934 - 9273325-9273807,9273898-9274062,9274155-9274235,927...    28   2.5  
03_02_0238 - 6687334-6687421,6687456-6687512,6688266-6688351,668...    27   4.3  
12_01_0045 - 354825-355504,355602-355776,355847-355927,357266-35...    27   5.7  
08_01_0392 - 3454224-3454325,3454926-3455035,3455496-3455609,345...    27   5.7  

>04_03_0487 +
           16471538-16471540,16471694-16471795,16471880-16471908,
           16472619-16472745
          Length = 86

 Score =  124 bits (300), Expect = 2e-29
 Identities = 53/68 (77%), Positives = 59/68 (86%)
 Frame = +1

Query: 1   ERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLT 180
           E+ KHK KRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC GC T+LCQPTGG+ARLT
Sbjct: 17  EKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLT 76

Query: 181 EGCSFRRK 204
           EGCSFRRK
Sbjct: 77  EGCSFRRK 84


>02_03_0220 +
           16545571-16545573,16545717-16545818,16545980-16546008,
           16549421-16553036
          Length = 1249

 Score = 50.4 bits (115), Expect = 4e-07
 Identities = 21/36 (58%), Positives = 26/36 (72%)
 Frame = +1

Query: 1   ERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHA 108
           E+ KHK KRLV  PNS+FMDVKC GC+ ++  F  A
Sbjct: 17  EKLKHKKKRLVQSPNSFFMDVKCQGCFNMSVRFDIA 52


>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
          Length = 45

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 19/29 (65%), Positives = 23/29 (79%)
 Frame = +1

Query: 1   ERRKHKLKRLVPHPNSYFMDVKCPGCYKI 87
           E+ KHK KRLV  PNS+FMDVKC GC+ +
Sbjct: 17  EKLKHKKKRLVQSPNSFFMDVKCQGCFSM 45


>12_01_0934 -
           9273325-9273807,9273898-9274062,9274155-9274235,
           9274347-9274475,9274590-9274661,9274758-9274826,
           9275143-9275514,9275590-9275703,9275729-9275848
          Length = 534

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 319 VMLRWIHCSELEKYHSIIQLEKNLKIK*GSVQDL 218
           VM RW+  S LE+++S +QL+  L     S+ D+
Sbjct: 149 VMNRWVRRSYLEQWNSSVQLDPMLPFAFTSLDDI 182


>03_02_0238 -
           6687334-6687421,6687456-6687512,6688266-6688351,
           6688410-6688589
          Length = 136

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 76  CYKITTVFSHAQRVVVCAGCSTILCQPTGGR 168
           CYKI+ ++SH Q ++    C  IL +PTG R
Sbjct: 96  CYKISKIYSHGQSLL----CLDIL-RPTGRR 121


>12_01_0045 -
           354825-355504,355602-355776,355847-355927,357266-357498,
           357921-358104
          Length = 450

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -3

Query: 310 RWIHCSELEKYHSI 269
           RWIH SELE+ H+I
Sbjct: 416 RWIHHSELEEVHTI 429


>08_01_0392 -
           3454224-3454325,3454926-3455035,3455496-3455609,
           3455930-3456043,3456474-3456531
          Length = 165

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +1

Query: 40  PNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGG 165
           PN     + C GC  +  ++      V CA CST+   P  G
Sbjct: 18  PNGAQSQLVCSGCRNLL-MYPAGATSVCCAVCSTVTAVPAPG 58



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 106 AQRVVVCAGCSTILCQPTGGRARLTEGCS 192
           AQ  +VC+GC  +L  P G  +     CS
Sbjct: 21  AQSQLVCSGCRNLLMYPAGATSVCCAVCS 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,781,200
Number of Sequences: 37544
Number of extensions: 146802
Number of successful extensions: 293
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)