Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00883
         (588 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    36   0.53 
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    35   1.2  
UniRef50_A6TUK0 Cluster: Electron transfer flavoprotein, alpha/b...    33   4.9  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 36.3 bits (80), Expect = 0.53
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = -3

Query: 235 RCVDELTAHPVLSGYWNP 182
           R VDELTAH VLSGYW+P
Sbjct: 158 RWVDELTAHLVLSGYWSP 175


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 35.1 bits (77), Expect = 1.2
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -2

Query: 50  WYLPVRTHKRSYHQ 9
           WYLP RTHKRSYH+
Sbjct: 572 WYLPARTHKRSYHR 585


>UniRef50_A6TUK0 Cluster: Electron transfer flavoprotein,
           alpha/beta-subunit-like protein; n=2; Clostridiales|Rep:
           Electron transfer flavoprotein, alpha/beta-subunit-like
           protein - Alkaliphilus metalliredigens QYMF
          Length = 265

 Score = 33.1 bits (72), Expect = 4.9
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 206 GVKWLLEPIDIYNVNAPYTLR*KY*GLSTVTTAAPPFKPKRI 81
           GV+ ++ P+D+Y + +   L+ KY G  TV T  PP   K +
Sbjct: 29  GVESVINPLDLYAIESGIQLKEKYGGKVTVFTMGPPSATKAL 70


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 519,291,819
Number of Sequences: 1657284
Number of extensions: 9052110
Number of successful extensions: 14734
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14732
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 40658285374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)