Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00882
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    25   2.9  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   2.9  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    24   9.0  

>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 1   GRGPEHLPEPVEEDAA-GAVLPVALDVHVRGGGA 99
           G+  E   +  +E A  GAV+   LD H +GGGA
Sbjct: 226 GQAAESQSKAFKETADFGAVIITKLDGHAKGGGA 259


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = +2

Query: 266 TTRSPARDTILDPTSPRSNKFV*YEINIFNVKKKKK 373
           +T  P+R T+L+P++ R + +   E ++  +  K++
Sbjct: 391 STSGPSRSTVLNPSTSRMSNYTGLESHLAQLSFKRR 426


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 239  DVSNLRPGSTTRSPARDTILDPTSPRSNKFV 331
            D+S+   G T   P  DT+L     + +KFV
Sbjct: 1533 DISSSWLGRTVSRPRLDTVLSSLGSKFSKFV 1563


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,182,279
Number of Sequences: 5004
Number of extensions: 20449
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)