Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00882
(375 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0334 + 33208266-33208481,33208789-33208940,33209141-332092... 31 0.39
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 29 1.6
01_01_0483 - 3550429-3551184 29 1.6
04_04_1681 + 35322992-35323765 28 2.1
12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613 28 2.7
04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949... 28 2.7
02_02_0521 - 11156594-11156956,11157097-11157483,11158327-111583... 28 2.7
11_05_0045 - 18577329-18578338,18578704-18578917 27 3.6
04_03_0672 + 18559984-18559986,18560096-18560569,18560666-185608... 27 3.6
06_03_1256 + 28787681-28788039,28788430-28788517 27 4.8
06_01_0368 + 2645007-2645317,2645422-2645509,2648927-2649183,264... 27 6.3
11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,181... 26 8.4
10_08_0114 - 14911119-14911301,14911458-14911550,14911634-149116... 26 8.4
09_01_0180 + 2632507-2634870 26 8.4
02_05_0418 + 28807763-28807777,28809216-28809242,28809588-288096... 26 8.4
>03_06_0334 +
33208266-33208481,33208789-33208940,33209141-33209221,
33209371-33209491
Length = 189
Score = 30.7 bits (66), Expect = 0.39
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -1
Query: 204 PMPQATMPYWTXRFFS*SMGHTRGDPPSPRQVS 106
P P PY RFFS S+ +RG PSP+Q S
Sbjct: 51 PPPPPLTPY---RFFSSSVSESRGTSPSPKQES 80
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Frame = +1
Query: 85 RGGGA---RQGHLPGGRGVAPR 141
RGGG R G PGGRGV PR
Sbjct: 37 RGGGRNGPRGGRFPGGRGVEPR 58
>01_01_0483 - 3550429-3551184
Length = 251
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 58 LPVALDVHVRGGGARQGHLPGGRGVAPRVPH 150
L A+ + GGG R G + GG G+AP PH
Sbjct: 162 LAAAVSAGMYGGGRRLGVIDGG-GIAPPSPH 191
>04_04_1681 + 35322992-35323765
Length = 257
Score = 28.3 bits (60), Expect = 2.1
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 11 RNTCQSQLRRTRLGRFFQLHSTFMCAGGEPDKDTCRGDGGSPLVC-PIDYEK 163
R++C S+L + GR S C + D+ CRG G+P C P Y K
Sbjct: 154 RDSCPSELSKKVNGRTVACRSA--CDVFDTDQYCCRGMYGNPSTCQPTFYSK 203
>12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613
Length = 787
Score = 27.9 bits (59), Expect = 2.7
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +1
Query: 1 GRGPEHLPEPVEEDAAGAVLPVALDVHVRGGGARQGHLPGGRGVAPRV 144
G G + E + D AG V V V GG R+ HL G G V
Sbjct: 724 GEGEQEAAECIGADEAGDERTVGGRVAVVRGGGRREHLEGEHGAGREV 771
>04_04_1237 -
31991817-31992569,31993452-31993550,31994343-31994976,
31995329-31995585
Length = 580
Score = 27.9 bits (59), Expect = 2.7
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +1
Query: 1 GRGPEHLPEPVEEDAAGAVLPVALDVH-VRG---GGARQGHLPGGRGVAPRVPHR 153
G G + V+ AG V P DV VRG GG R+G GG V RV R
Sbjct: 451 GGGRREQRQQVDVRGAGGVRPAGGDVRRVRGRGGGGRRRGRGAGGDYVHVRVQQR 505
>02_02_0521 -
11156594-11156956,11157097-11157483,11158327-11158383,
11159671-11159970
Length = 368
Score = 27.9 bits (59), Expect = 2.7
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = +1
Query: 7 GPEHLPEPVEEDAAGAVLPVALDVHVRGGGARQGHLPGGRGV---APRVP 147
G HLP P+ + A V + V G G G GG GV AP VP
Sbjct: 27 GVSHLPRPILVKPSSAAAAVNVVVVSAGSGGGAGGGGGGVGVVAGAPAVP 76
>11_05_0045 - 18577329-18578338,18578704-18578917
Length = 407
Score = 27.5 bits (58), Expect = 3.6
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +1
Query: 13 EHLPEPVEEDAAGAVLPVALDVHVRGGGARQGHL----PGGRGVAPRVPHRL 156
EH+ V + A A L + +DV V GGG G PGGR + V RL
Sbjct: 290 EHIAHCVAD--ALAPLGIGIDVDVDGGGGWNGLFWAVHPGGRAILDSVEARL 339
>04_03_0672 +
18559984-18559986,18560096-18560569,18560666-18560836,
18561494-18561640
Length = 264
Score = 27.5 bits (58), Expect = 3.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 73 DVHVRGGGARQGHLPGGRGVAPRVPHRL*EESXCP 177
D H R ++Q + GG G APR P+R+ S P
Sbjct: 78 DPHRRHSLSQQREVGGGIGSAPRSPYRMVHGSASP 112
>06_03_1256 + 28787681-28788039,28788430-28788517
Length = 148
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 71 STFMCAGGEPDKDTCRGDGGSPLVCPIDYEK 163
+ F GG P K+ G GG+P C D +K
Sbjct: 77 TAFDAGGGVPCKEKSGGHGGAPSPCSDDDDK 107
>06_01_0368 +
2645007-2645317,2645422-2645509,2648927-2649183,
2649453-2649504,2649527-2649838
Length = 339
Score = 26.6 bits (56), Expect = 6.3
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -1
Query: 138 RGDPPSPRQVSLSGS 94
R PPSPR+VS+SGS
Sbjct: 211 RPTPPSPRKVSVSGS 225
>11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,
1816199-1816309,1816934-1817074,1817153-1817323,
1817421-1817625,1817714-1817886,1817997-1818079,
1818487-1818626,1818806-1818891,1818957-1819142,
1819172-1819365,1820387-1820736,1821153-1821235
Length = 1187
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +2
Query: 35 RRTRLGRFFQLHSTFMCAGGEPDKDTCRGDGGSPLVCPIDYEKNRYVQYG 184
R + L R +L + P + +G G PL P+D E ++ +G
Sbjct: 979 RASNLSRGRRLRPVLLLDEPPPPGNLVQGGAGPPLQIPVDRESTKHRTHG 1028
>10_08_0114 -
14911119-14911301,14911458-14911550,14911634-14911678,
14911831-14911953,14912090-14912177,14912976-14913118
Length = 224
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 43 AAGAVLPVALDVHVRGGGARQGHLPGGRGVAP 138
AA AV P+AL + GGG GG G P
Sbjct: 2 AAAAVDPMALGLGTSGGGGGGESAVGGDGAEP 33
>09_01_0180 + 2632507-2634870
Length = 787
Score = 26.2 bits (55), Expect = 8.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 129 PPSPRQVSLSGSPPAHMN 76
PPSP+ V S SPP+ N
Sbjct: 251 PPSPKLVPFSNSPPSSAN 268
>02_05_0418 +
28807763-28807777,28809216-28809242,28809588-28809621,
28809909-28810154,28810518-28810948,28812759-28813418
Length = 470
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 37 EDAAGAVLPVALDVHVRGGGARQGHLPGGRG 129
E+ A A V L V GGG R+G +P RG
Sbjct: 420 EEEANAEEAVVLKPSVDGGGERRGVVPEKRG 450
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,681,091
Number of Sequences: 37544
Number of extensions: 193612
Number of successful extensions: 776
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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