Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00881
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    29   0.72 
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   3.8  
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    26   5.1  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   6.7  

>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = -1

Query: 662 HDSRCNPK*TCCVYYFFRSKMIVLVDTTVVNRETLIDGRRRHHTNNPQNI*CYTLIAWNV 483
           HD  C    T  V   + +  I+ + T  +    L DG++ H   +P +I C +  A NV
Sbjct: 445 HDLSCEES-TIFVSTIYGNSQILQITTKEIR---LFDGKKLHSWISPMSITCGSSFADNV 500

Query: 482 C---SGG*IL 462
           C   +GG IL
Sbjct: 501 CVAVAGGLIL 510


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 501 CVTSNVLWIIGMMTAPSIDERFAINDGS 584
           CV  N  W+IG++     D +  +N G+
Sbjct: 412 CVLRNTKWVIGVVVFTGDDTKIMLNSGA 439


>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 732 YVTKVQNERLRFSDKKKNTNSHNTRQ 655
           YV+KV ++   F +K+KN  SHN ++
Sbjct: 105 YVSKVTDKCKSFYEKEKNHASHNAQK 130


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 97  GIMILRCIGPVFDRCLQHIF 156
           G  +LRC    FD CLQ +F
Sbjct: 444 GEFVLRCSTSDFDHCLQSVF 463


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,948,391
Number of Sequences: 5004
Number of extensions: 57508
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)