Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00880
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c...    28   1.4  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    27   3.2  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    26   5.6  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    26   5.6  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   5.6  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    25   7.4  
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc...    25   9.8  

>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 315

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +3

Query: 273 EEPDLVENPYAATANEELYLDDPKKTLRG---YFE 368
           E+P+ V+N    T + + YL DP K L     YFE
Sbjct: 59  EDPEYVQNTQVHTLSSDAYLKDPTKFLTDLLCYFE 93


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1101

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 264  DADEEPDLVENPYAATANEELYLDDPKKTLRGYFEREGHE 383
            +++ +  L E+ + A A +E+    PK+ L G  ERE +E
Sbjct: 980  NSNNDKQLDESKFQAIAMKEMPERHPKEILPGQIEREAYE 1019


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +1

Query: 127 EIKQKALEMKAERDRMIKEAIE 192
           E ++ ALE KAER+R+ KE +E
Sbjct: 48  EKRKAALERKAERERLEKEEME 69


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 447 PLGVPLGIYTGRFLSPR 397
           PLG+ LG+YTGR  + R
Sbjct: 323 PLGLALGVYTGRISNYR 339


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 554 GLLRQAKHESRRRKQRDWSADDYYDSDEDTFLEPHRAR 667
           GLL +   ESR +    WS  D +D  + +  + H ++
Sbjct: 810 GLLDRLNEESRTKLVSSWSKQDAFDYSKSSTHQEHLSK 847


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 494 EEEGGVVACALEACRILDRAGLLRQAKHESRRRKQRDWSADDYYD 628
           EE   V+A  LEA RI D +  L    HES   + RD   + +++
Sbjct: 652 EECDAVIATVLEANRIRDLSYQLLFKNHESVNLELRDPEREFFFE 696


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/54 (22%), Positives = 27/54 (50%)
 Frame = +1

Query: 292 KIRMLLQQTRSYTSMTQRRRYEATSSARVMS*TMTARREESASIYAEWNSQWMI 453
           K+R    +   +T+ ++  RY    +  +   ++ A ++ +A+ Y  WN QW +
Sbjct: 563 KMRRKCWRVYHFTARSKDVRYGLKMAIGIGLLSIVAFQKSTAARYTLWNGQWSL 616


>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = -2

Query: 441 GVPLGIYTGRFLSPRSHSSAHDPRARSSLVASSLGHRGIAPRLL*QHTDFRPGLVLHQRL 262
           G+P G+     L+     ++ DPRA + L      H G          D    LVL  ++
Sbjct: 317 GIPHGVCNAVLLAHVQKFNSRDPRANARL-GDIAFHLGCEEHTAEAALDRISQLVLEVKI 375

Query: 261 RPSPID 244
           RP  +D
Sbjct: 376 RPHLVD 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,304,162
Number of Sequences: 5004
Number of extensions: 42168
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)