Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00880
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1137 + 9412230-9412378,9412549-9412634,9413417-9413496,941...    33   0.20 
09_02_0564 + 10698710-10699294                                         29   4.4  
06_03_0449 + 20907491-20910146,20910313-20910782                       29   4.4  
02_02_0553 - 11433005-11433046,11433314-11433421                       28   5.8  

>06_01_1137 +
           9412230-9412378,9412549-9412634,9413417-9413496,
           9413826-9413881,9414038-9414086,9414692-9414841,
           9414993-9415088,9415442-9415555,9415655-9415785,
           9416171-9416408,9416603-9416656,9417100-9417117,
           9417906-9418722,9418797-9418846
          Length = 695

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +1

Query: 1   LKANHYTRVRVGHQIKFGSSTRNYIVMGPDFDCEGESELSVTEIKQKALEMKAERDRMIK 180
           +K   Y  + VG  I+FG S+R YI  GP      E ++      QK  + + ++D + +
Sbjct: 106 VKKKIYVEIHVGDVIRFGQSSRLYIFQGPSELMPPEKDM------QKLRDARVQQDMLDR 159

Query: 181 EA 186
           EA
Sbjct: 160 EA 161


>09_02_0564 + 10698710-10699294
          Length = 194

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 22/57 (38%), Positives = 25/57 (43%)
 Frame = +2

Query: 485 PPREEEGGVVACALEACRILDRAGLLRQAKHESRRRKQRDWSADDYYDSDEDTFLEP 655
           PPR E+ G+  CAL    I +   L   A   S R      S DD  D DED  L P
Sbjct: 16  PPRLEDAGLEDCALPPESIAEAFSLAAMA--VSSRLAHFSLSDDD-DDDDEDLLLPP 69


>06_03_0449 + 20907491-20910146,20910313-20910782
          Length = 1041

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 527  EACRI--LDRAGLLRQAKHESRRRKQRDWSADDYYDSDEDTFL 649
            EAC++  +D A  L +AK  SRRR       DD  D D   F+
Sbjct: 995  EACQLDYVDGAAPLLEAKKGSRRRSSESGRWDDDDDDDSGNFV 1037


>02_02_0553 - 11433005-11433046,11433314-11433421
          Length = 49

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 548 RAGLLRQAK-HESRRRKQRDWSAD 616
           RAGL +  K HES RR ++DW+ D
Sbjct: 4   RAGLRKFIKSHESDRRSKKDWNQD 27


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,417,111
Number of Sequences: 37544
Number of extensions: 338079
Number of successful extensions: 1124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)