Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00880
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22181-1|CAA80179.1|  710|Caenorhabditis elegans Hypothetical pr...    54   1e-07
U97550-3|AAK18981.2|  423|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z29121-1|CAA82387.3|  324|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U49947-5|AAU05585.1|  111|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U49947-4|AAU05586.1|  192|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U28993-8|AAK31496.1|  632|Caenorhabditis elegans C.elegans homeo...    27   9.1  
U28993-7|AAL27244.1|  641|Caenorhabditis elegans C.elegans homeo...    27   9.1  

>Z22181-1|CAA80179.1|  710|Caenorhabditis elegans Hypothetical
           protein ZK632.2 protein.
          Length = 710

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
 Frame = +3

Query: 252 GMGEDADEEP-DLVENPYAATANEELYLD-DPKKTLRGYFEREGHELNYDCEERGIG--- 416
           GM    DE+P   VE       + E Y + DPKK L+ +FEREG ++N++  E+G G   
Sbjct: 245 GMDYGEDEKPLTTVETDAHLMEDREAYYNQDPKKALQKFFEREGFDMNFEFSEQGQGHTH 304

Query: 417 QYICRVELPMD-DPHGRPVMAAVIHRGKKKEA 509
           +++C +ELP++ D   R   A+      KK+A
Sbjct: 305 KWVCSIELPVEIDGVDRAFTASATVSTSKKDA 336



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 20/47 (42%), Positives = 33/47 (70%)
 Frame = +2

Query: 512 VACALEACRILDRAGLLRQAKHESRRRKQRDWSADDYYDSDEDTFLE 652
           + CAL+ACRILD   +LR++ +   R +++   A+DYYD D+D +L+
Sbjct: 338 IQCALDACRILDTYNVLRKS-NTKLRMQRKTLEANDYYDEDDDLYLD 383



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 26/85 (30%), Positives = 36/85 (42%)
 Frame = +1

Query: 1   LKANHYTRVRVGHQIKFGSSTRNYIVMGPDFDCEGESELSVTEIKQKALEMKAERDRMIK 180
           L    Y R RVG   +FG STR    +GP+ D E E + S TE+K +  + + E      
Sbjct: 165 LPPKQYIRTRVGFIFQFGESTRILNFVGPEEDSEPEWDCSPTEMKLRKHKKELEAKLRAA 224

Query: 181 EAIEQXXXXXXXXXXXXXXXGIDWG 255
            A E                G+D+G
Sbjct: 225 AAQEMIDDEKREKEEEGCGWGMDYG 249


>U97550-3|AAK18981.2|  423|Caenorhabditis elegans Hypothetical
           protein T20F7.6 protein.
          Length = 423

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +1

Query: 58  STRNYIVMGPDFDCEGESELSVTEIKQKALEMKAERDRMIKEAIE 192
           STR+ ++  PDF  + +  LSVT+  +  L++  ER +  KE+ E
Sbjct: 79  STRHVLLSDPDFGGKLDGILSVTDFIKVMLKIYRERTKCEKESTE 123


>Z29121-1|CAA82387.3|  324|Caenorhabditis elegans Hypothetical
           protein ZK757.1 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 347 LLWVIEV*LLVCCSSIRIFDQVWFFISV 264
           LLWVI+   + C    RI+  VW  +S+
Sbjct: 250 LLWVIKCKKISCFIHFRIYPSVWLHVSL 277


>U49947-5|AAU05585.1|  111|Caenorhabditis elegans Hypothetical
           protein C30G4.4a protein.
          Length = 111

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 578 ESRRRKQRDWSADDYYDSDEDTFLEPH 658
           E+R ++ R W+  DYYDS  D +  P+
Sbjct: 14  ETRYKRDR-WTCVDYYDSLRDPYFSPN 39


>U49947-4|AAU05586.1|  192|Caenorhabditis elegans Hypothetical
           protein C30G4.4b protein.
          Length = 192

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 578 ESRRRKQRDWSADDYYDSDEDTFLEPH 658
           E+R ++ R W+  DYYDS  D +  P+
Sbjct: 40  ETRYKRDR-WTCVDYYDSLRDPYFSPN 65


>U28993-8|AAK31496.1|  632|Caenorhabditis elegans C.elegans homeobox
           protein 38,isoform a protein.
          Length = 632

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 551 AGLLRQAKHESRRRKQRDWSADDYYDSDED 640
           AGLL     +SRRR+  D++   Y   +ED
Sbjct: 123 AGLLSPLHVDSRRRESHDFNTSPYIKEEED 152


>U28993-7|AAL27244.1|  641|Caenorhabditis elegans C.elegans homeobox
           protein 38,isoform b protein.
          Length = 641

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 551 AGLLRQAKHESRRRKQRDWSADDYYDSDED 640
           AGLL     +SRRR+  D++   Y   +ED
Sbjct: 123 AGLLSPLHVDSRRRESHDFNTSPYIKEEED 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,071,537
Number of Sequences: 27780
Number of extensions: 253539
Number of successful extensions: 803
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)