Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00880
         (667 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    26   0.28 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.5  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    22   6.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.0  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +1

Query: 277 NQTWSKIRMLLQQTRSYTSMTQRRRYE 357
           NQT++ ++M ++    +T ++  R+YE
Sbjct: 579 NQTYTSLQMAMKNPIEFTDLSNERKYE 605


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
 Frame = +2

Query: 578 ESRRRK---QRDWSADDYYDSDEDTFLEPHRAR 667
           +S RRK    R WS D    SDED  L  H+ +
Sbjct: 204 DSDRRKGSIARCWSLDSTAASDEDISLTTHQQK 236


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = +1

Query: 262 KTLMKNQTWSK--IRMLLQQTRSYTSMTQRRRYEATSSARVMS*TMTARREESASIYAEW 435
           K L++ +T  K   R   ++ +SY +    R+Y  TS  R        R  E   I + +
Sbjct: 260 KKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETSKERSRDRRERGRSREHRIIPSHY 319

Query: 436 NSQWMIP 456
             Q  +P
Sbjct: 320 IEQIPVP 326


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 139 SVLFPSLTVQTRLHSQSRGPSQYSS*C 59
           SVLFPSL  +  LH +        S C
Sbjct: 416 SVLFPSLDSRDELHPRELEAVNLGSAC 442


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,456
Number of Sequences: 438
Number of extensions: 3450
Number of successful extensions: 40
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)