Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00877
(349 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0334 + 33208266-33208481,33208789-33208940,33209141-332092... 30 0.57
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 29 1.3
01_01_0483 - 3550429-3551184 29 1.3
03_05_0320 - 23084669-23085165,23085192-23086074 28 2.3
06_03_1364 - 29590251-29590832 27 4.0
04_03_0672 + 18559984-18559986,18560096-18560569,18560666-185608... 27 4.0
08_02_0959 - 23055078-23055177,23055408-23055985 27 5.3
06_01_0368 + 2645007-2645317,2645422-2645509,2648927-2649183,264... 27 5.3
04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949... 27 5.3
11_05_0045 - 18577329-18578338,18578704-18578917 26 7.1
11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,181... 26 7.1
10_08_0114 - 14911119-14911301,14911458-14911550,14911634-149116... 26 7.1
09_01_0180 + 2632507-2634870 26 7.1
02_05_0418 + 28807763-28807777,28809216-28809242,28809588-288096... 26 7.1
01_06_1416 - 37174913-37175006,37175299-37175441,37175932-371760... 26 7.1
01_06_0964 + 33446750-33447868 26 7.1
11_08_0029 - 27783907-27784310,27784418-27786616,27786751-27787333 26 9.3
11_08_0014 - 27631971-27632374,27632486-27635402 26 9.3
09_04_0367 - 16978069-16978085,16978514-16978611,16979069-169792... 26 9.3
01_06_1793 - 39916024-39916824 26 9.3
>03_06_0334 +
33208266-33208481,33208789-33208940,33209141-33209221,
33209371-33209491
Length = 189
Score = 29.9 bits (64), Expect = 0.57
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -1
Query: 178 PMPQATMPYWT*RFFS*SMGYTRGDPPSPRQVS 80
P P PY RFFS S+ +RG PSP+Q S
Sbjct: 51 PPPPPLTPY---RFFSSSVSESRGTSPSPKQES 80
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Frame = +2
Query: 59 RGGGA---RQGHLPGGRGVAPR 115
RGGG R G PGGRGV PR
Sbjct: 37 RGGGRNGPRGGRFPGGRGVEPR 58
>01_01_0483 - 3550429-3551184
Length = 251
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 32 LPVALDVHVRGGGARQGHLPGGRGVAPRVPH 124
L A+ + GGG R G + GG G+AP PH
Sbjct: 162 LAAAVSAGMYGGGRRLGVIDGG-GIAPPSPH 191
>03_05_0320 - 23084669-23085165,23085192-23086074
Length = 459
Score = 27.9 bits (59), Expect = 2.3
Identities = 23/75 (30%), Positives = 35/75 (46%)
Frame = +3
Query: 48 TFMCAGGEPDKDTCRGDGGSPLVYPIDYEKNRYVQYGIVAWGIGCGEDGTPGVYVDVSNL 227
T+ GGEP T + +GG P P D E + ++Y + +G G ++ L
Sbjct: 141 TYQPKGGEPLPCTYQPEGGFP---PSDVEGDGNLRYPLEFRSVGILCQGEEFAVAELQVL 197
Query: 228 RTWIDDNVAARDTIL 272
R I+ NV AR +L
Sbjct: 198 RN-INANVKARLCVL 211
>06_03_1364 - 29590251-29590832
Length = 193
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 171 GIGCGEDGTPGVYVDVSNLRTWIDDNVAARDTILDPTS 284
G G G+PG +SN++TW + +T LD S
Sbjct: 120 GGNMGRAGSPGFKWHLSNVQTWCSAALTDENTCLDGLS 157
>04_03_0672 +
18559984-18559986,18560096-18560569,18560666-18560836,
18561494-18561640
Length = 264
Score = 27.1 bits (57), Expect = 4.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 47 DVHVRGGGARQGHLPGGRGVAPRVPHRL*KESLCP 151
D H R ++Q + GG G APR P+R+ S P
Sbjct: 78 DPHRRHSLSQQREVGGGIGSAPRSPYRMVHGSASP 112
>08_02_0959 - 23055078-23055177,23055408-23055985
Length = 225
Score = 26.6 bits (56), Expect = 5.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 186 EDGTPGVYVDVSNLRTWIDDNV 251
+DGT GV++D TW+ +V
Sbjct: 95 DDGTGGVFIDSGTSLTWLQQDV 116
>06_01_0368 +
2645007-2645317,2645422-2645509,2648927-2649183,
2649453-2649504,2649527-2649838
Length = 339
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -1
Query: 112 RGDPPSPRQVSLSGS 68
R PPSPR+VS+SGS
Sbjct: 211 RPTPPSPRKVSVSGS 225
>04_04_1237 -
31991817-31992569,31993452-31993550,31994343-31994976,
31995329-31995585
Length = 580
Score = 26.6 bits (56), Expect = 5.3
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +2
Query: 5 VEEDAAGAVLPVALDVH-VRG---GGARQGHLPGGRGVAPRVPHRL*KESLCPI 154
V+ AG V P DV VRG GG R+G GG V RV R +++L +
Sbjct: 461 VDVRGAGGVRPAGGDVRRVRGRGGGGRRRGRGAGGDYVHVRVQQRNGRKTLTTV 514
>11_05_0045 - 18577329-18578338,18578704-18578917
Length = 407
Score = 26.2 bits (55), Expect = 7.1
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +2
Query: 26 AVLPVALDVHVRGGGARQGHL----PGGRGVAPRVPHRL 130
A L + +DV V GGG G PGGR + V RL
Sbjct: 301 APLGIGIDVDVDGGGGWNGLFWAVHPGGRAILDSVEARL 339
>11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,
1816199-1816309,1816934-1817074,1817153-1817323,
1817421-1817625,1817714-1817886,1817997-1818079,
1818487-1818626,1818806-1818891,1818957-1819142,
1819172-1819365,1820387-1820736,1821153-1821235
Length = 1187
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +3
Query: 9 RRTRLGRFFQLHSTFMCAGGEPDKDTCRGDGGSPLVYPIDYEKNRYVQYG 158
R + L R +L + P + +G G PL P+D E ++ +G
Sbjct: 979 RASNLSRGRRLRPVLLLDEPPPPGNLVQGGAGPPLQIPVDRESTKHRTHG 1028
>10_08_0114 -
14911119-14911301,14911458-14911550,14911634-14911678,
14911831-14911953,14912090-14912177,14912976-14913118
Length = 224
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 17 AAGAVLPVALDVHVRGGGARQGHLPGGRGVAP 112
AA AV P+AL + GGG GG G P
Sbjct: 2 AAAAVDPMALGLGTSGGGGGGESAVGGDGAEP 33
>09_01_0180 + 2632507-2634870
Length = 787
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 103 PPSPRQVSLSGSPPAHMN 50
PPSP+ V S SPP+ N
Sbjct: 251 PPSPKLVPFSNSPPSSAN 268
>02_05_0418 +
28807763-28807777,28809216-28809242,28809588-28809621,
28809909-28810154,28810518-28810948,28812759-28813418
Length = 470
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 11 EDAAGAVLPVALDVHVRGGGARQGHLPGGRG 103
E+ A A V L V GGG R+G +P RG
Sbjct: 420 EEEANAEEAVVLKPSVDGGGERRGVVPEKRG 450
>01_06_1416 -
37174913-37175006,37175299-37175441,37175932-37176027,
37177125-37177364,37177456-37177812,37178020-37178097,
37178387-37178434,37179406-37179675,37179954-37180054,
37180452-37180605
Length = 526
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 245 VVDPGPQVRDVHVNSWSAVLSAAYAPGYDAVLDI 144
VVDPG DVH S +A +A Y L+I
Sbjct: 38 VVDPGMIRADVHSKSAAAAATAGYLAARPPTLEI 71
>01_06_0964 + 33446750-33447868
Length = 372
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 192 GTPGVYVDVSNLRTWIDDNVAARDTILD 275
G P V VDV + RTW+ + T LD
Sbjct: 138 GAPDVDVDVDDARTWLSAVLTDHVTCLD 165
>11_08_0029 - 27783907-27784310,27784418-27786616,27786751-27787333
Length = 1061
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 135 KNRYVQYGIVAWGIGCGEDGTPGVYVDVSNLRTWIDDNVAAR 260
K+ YGI+ + G+ T ++V +LR W+ + AR
Sbjct: 938 KSDVFSYGIMLLEVFTGKRPTDAMFVGDMSLRKWVSEAFPAR 979
>11_08_0014 - 27631971-27632374,27632486-27635402
Length = 1106
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 135 KNRYVQYGIVAWGIGCGEDGTPGVYVDVSNLRTWIDDNVAAR 260
K+ YGI+ + G+ T ++V +LR W+ + AR
Sbjct: 983 KSDVFSYGIMLLEVFTGKRPTDAMFVGDMSLRKWVSEAFPAR 1024
>09_04_0367 -
16978069-16978085,16978514-16978611,16979069-16979229,
16979320-16979548,16979731-16980593
Length = 455
Score = 25.8 bits (54), Expect = 9.3
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Frame = +3
Query: 36 QLHSTFMCAGGEPDKDTCRGDGGSPLV----YPIDYEKNRYVQYGIVAWGIG 179
+ +S C GE K C G G Y D+ +Y YGI +W G
Sbjct: 170 EFYSNGDCYEGEFHKGRCNGSGVYTFFGKGKYEGDWVDGKYDGYGIESWARG 221
>01_06_1793 - 39916024-39916824
Length = 266
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 109 GDPPSPRQVSLSGSPPAHMNV 47
G P PRQ SGS P ++NV
Sbjct: 195 GAPAPPRQEGGSGSAPTYLNV 215
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,018,922
Number of Sequences: 37544
Number of extensions: 179729
Number of successful extensions: 714
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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