Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00877
         (349 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    59   1e-09
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    49   8e-07
U28735-5|AAF99955.3|  279|Caenorhabditis elegans Hypothetical pr...    34   0.032
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    29   0.91 
U80441-5|AAB37654.1|  207|Caenorhabditis elegans Atp synthase su...    27   3.7  
U80441-4|AAR25649.1|  228|Caenorhabditis elegans Atp synthase su...    27   3.7  
Z69386-1|CAA93430.1|  241|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z48006-1|CAA88047.1|  642|Caenorhabditis elegans Hypothetical pr...    27   4.9  
AF077545-2|AAC26305.3|  356|Caenorhabditis elegans Hypothetical ...    26   6.4  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 58.8 bits (136), Expect = 1e-09
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = +3

Query: 48  TFMCAGGEPDK-DTCRGDGGSPLVYPIDYEKNRYVQYGIVAWGIGCGEDGTPGVYVDVSN 224
           + +CAG    K D+C+GD G PL+   D     +   G+V+WGIGC   G PGVY +V +
Sbjct: 223 SMLCAGYSYGKIDSCQGDSGGPLMCARD---GHWELTGVVSWGIGCARPGMPGVYGNVHS 279

Query: 225 LRTWID 242
             TWI+
Sbjct: 280 ASTWIN 285


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 49.2 bits (112), Expect = 8e-07
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +3

Query: 57  CAGG-EPDKDTCRGDGGSPLVYPIDYEKNRYVQYGIVAWGIGCGEDGTPGVYVDVSNLRT 233
           CAG  E   D+C+GD G P  +    E   +V  G+++WG GC +   PG+Y  V+   +
Sbjct: 197 CAGYLEGGIDSCQGDSGGP--FACRREDGAFVLAGVISWGDGCAQKKQPGIYTMVAPYLS 254

Query: 234 WI 239
           WI
Sbjct: 255 WI 256


>U28735-5|AAF99955.3|  279|Caenorhabditis elegans Hypothetical
           protein F48E3.4 protein.
          Length = 279

 Score = 33.9 bits (74), Expect = 0.032
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +3

Query: 87  CRGDGGSPLVYPIDYEKNRYVQYGIVAWGIG---CGEDGTPGVYVDVSNLRT 233
           C  D G+PL   +D E N+YVQ GIV+   G     ED +  V V+ S ++T
Sbjct: 197 CWDDIGAPLECVLDVENNKYVQVGIVSGLYGREMDKEDNSTMVVVNCSEVQT 248


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 57  CAGGEPDKDTCRGDGGSPLVYPIDYEKNRYVQYGIVAWGIGC 182
           C   E DK+ C GD G  L +        ++   IV++G  C
Sbjct: 260 CTAEEEDKNVCSGDSGGGLTFHQSDSAREFI-IAIVSYGSDC 300


>U80441-5|AAB37654.1|  207|Caenorhabditis elegans Atp synthase
           subunit protein 3,isoform a protein.
          Length = 207

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +3

Query: 150 QYGIVAWGIGCGEDGTPGVYVDVSNLRTWIDDNVAARDTILDPTSPRSNK 299
           +Y    +  G  ++    +  D++N+R+   DN   ++ +LDPT   + K
Sbjct: 33  RYAAALYSAGHKQNKLDQISTDLNNVRSVYKDNKKFQEFVLDPTLKANKK 82


>U80441-4|AAR25649.1|  228|Caenorhabditis elegans Atp synthase
           subunit protein 3,isoform b protein.
          Length = 228

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +3

Query: 150 QYGIVAWGIGCGEDGTPGVYVDVSNLRTWIDDNVAARDTILDPTSPRSNK 299
           +Y    +  G  ++    +  D++N+R+   DN   ++ +LDPT   + K
Sbjct: 54  RYAAALYSAGHKQNKLDQISTDLNNVRSVYKDNKKFQEFVLDPTLKANKK 103


>Z69386-1|CAA93430.1|  241|Caenorhabditis elegans Hypothetical
           protein ZK596.1 protein.
          Length = 241

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 50  VHVRGGGARQGHLPGGRGVAPRVP 121
           V + G G R GH  GG G AP++P
Sbjct: 17  VVLAGPGGRHGHGGGGFGGAPQLP 40


>Z48006-1|CAA88047.1|  642|Caenorhabditis elegans Hypothetical
           protein F19C6.1 protein.
          Length = 642

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 75  DKDTCRGDGGSPLVYPIDYEKNRYVQYGIVAWGIGC 182
           D +  +G  G+      +  KN    YG+  WG+GC
Sbjct: 355 DNEPIKGRVGTVGYMAPEIVKNERYSYGVDWWGVGC 390


>AF077545-2|AAC26305.3|  356|Caenorhabditis elegans Hypothetical
           protein H41C03.2 protein.
          Length = 356

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 15  TRLGRFFQLHSTFMCAGGEPDKDTCRGDGGSPLVYPIDY 131
           T+L +  QL S   CAG    + +CR   GS   YP  Y
Sbjct: 24  TKLAKCSQLSSCEQCAGIVDREVSCRWCLGSSQCYPSKY 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,343,136
Number of Sequences: 27780
Number of extensions: 131192
Number of successful extensions: 355
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)