Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00875
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0878 + 29039110-29039366,29039634-29039822,29039907-290400... 32 0.51
09_06_0096 - 20840855-20841994 31 0.68
03_05_1131 - 30606808-30607042,30607141-30607664 31 1.2
02_03_0381 - 18339290-18339994,18340083-18340103,18341925-183419... 30 1.6
12_01_0965 + 9688062-9688532 30 2.1
11_06_0344 + 22540436-22540737,22541304-22543545 30 2.1
08_01_0017 + 132109-132924 29 2.7
03_06_0297 - 32924162-32924605 29 3.6
02_03_0246 - 16807619-16808145,16808208-16808868 29 3.6
10_07_0042 - 12298536-12298589,12298704-12298810,12298850-122988... 29 4.8
04_03_0173 + 12248973-12249809 29 4.8
03_05_0783 - 27662178-27662237,27662659-27662700,27662791-276628... 28 6.3
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 28 8.4
05_07_0056 + 27382708-27383871,27384450-27384818 28 8.4
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 28 8.4
>04_04_0878 +
29039110-29039366,29039634-29039822,29039907-29040044,
29040786-29041011,29041686-29041878,29041963-29042123
Length = 387
Score = 31.9 bits (69), Expect = 0.51
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 217 DRYARVCVRVLSGAKYSGVSVRLTCEDGTVRPHRVATPA-RCHCAACGPGLTKHPKPG 387
D Y VC+ L G + SG R E R V P + HC ACG GL KHP+ G
Sbjct: 318 DSYVPVCMVSLEGKEKSG-GYR-DIEVDYPRGGFVGVPVDKNHCYACGDGL-KHPEDG 372
>09_06_0096 - 20840855-20841994
Length = 379
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +1
Query: 85 PELRHCRSDPHPDGSPRPVRQQVPHH 162
P +R R PHPDG+P P VPHH
Sbjct: 306 PVVRRRRPTPHPDGAPPP----VPHH 327
>03_05_1131 - 30606808-30607042,30607141-30607664
Length = 252
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +1
Query: 40 QRKTASPQ*MRP*EHPELRHCRSDPHPDGSPRPVRQQVPHHRLHGVPRLL 189
+R A+ P H R S P P +PRPVR V + ++G RLL
Sbjct: 11 KRHRAAAAAAAPASHSHQRERTSIPAPAAAPRPVRIYVVFYSMYGHVRLL 60
>02_03_0381 -
18339290-18339994,18340083-18340103,18341925-18341982,
18342084-18342220,18342480-18342650
Length = 363
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = -3
Query: 192 SQEPWHSVKPVMGNLLTHR----PWAPIGMRIRPTVSELGML 79
+ +PW ++P++GN++ R W P +R + S+ G +
Sbjct: 299 TDDPWRDLQPIVGNIMIPRDGSKSWLPESLRAKKDTSDRGQV 340
>12_01_0965 + 9688062-9688532
Length = 156
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 499 RVVVSPRFPRSAGIYPGSRT-PCPAPAVLGSWY 404
+ +++ P GIYP T PC P V G WY
Sbjct: 124 QAMLALNMPSICGIYPSYNTAPCSIPTVGGIWY 156
>11_06_0344 + 22540436-22540737,22541304-22543545
Length = 847
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +1
Query: 109 DPHPDGSPRPVRQQVPHHRLHGVPRLLRLWNYL*QPDRYARVCVRVLSGAKYSGVSVRLT 288
D P+ +P+ +R H R VPR + N+L + RVC G K G RL
Sbjct: 625 DFSPEDAPQNLRHVAMHARFLTVPRWIAGLNHL--SSLHIRVCKLAPEGVKILGRLHRLE 682
Query: 289 C 291
C
Sbjct: 683 C 683
>08_01_0017 + 132109-132924
Length = 271
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +2
Query: 224 THESACECCQAR--STAACPCDSRAKTGRSDR 313
+H S C CC++R S A+ D+ + RSDR
Sbjct: 96 SHSSTCSCCRSRTASDASASADAVTRALRSDR 127
>03_06_0297 - 32924162-32924605
Length = 147
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/41 (43%), Positives = 20/41 (48%)
Frame = -1
Query: 374 CLVSPGPQAAQWQRAGVATRCGRTVPSSHVSRTDTPLYFAP 252
CL P AA +RA V RCG T P + V TD L P
Sbjct: 23 CLHRPQVGAAAARRAAVGVRCGGT-PPAEVPGTDRSLEELP 62
>02_03_0246 - 16807619-16808145,16808208-16808868
Length = 395
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +2
Query: 245 CCQARSTAAC-PCDSRAKTGRSDRTGSPRRRAATVPPA 355
C +R A C PC GR R SP T PPA
Sbjct: 102 CRSSRMAARCWPCRPPCCCGRRRRAASPSASPCTTPPA 139
>10_07_0042 -
12298536-12298589,12298704-12298810,12298850-12298861,
12299554-12300511
Length = 376
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 164 GFTECHGSCDSGTIYNNQTGTHESACECCQARSTA 268
GFT C S IYN + T E + QA S+A
Sbjct: 167 GFTNCRKSISKAEIYNPEADTWEPLPDLRQAHSSA 201
>04_03_0173 + 12248973-12249809
Length = 278
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -2
Query: 214 VVIDSSRVAGAVALREAGDGELVDAQAVGSHRDADQTYSV*ARDAL 77
+V+D + +L EA GE+V Q + + D + YS+ A+ AL
Sbjct: 66 LVVDDAAAGAITSLPEATQGEVVALQVLLDYYDPVKLYSLKAKTAL 111
>03_05_0783 -
27662178-27662237,27662659-27662700,27662791-27662892,
27662991-27663147,27663230-27663307,27663391-27663446,
27663557-27663634,27663736-27663867,27663943-27664078,
27664252-27664403,27665317-27665391,27665476-27665535,
27665865-27665944,27666392-27666462,27666549-27666689,
27667467-27667555,27668657-27668731,27669303-27669401,
27669526-27669572,27669654-27669875,27671485-27671557,
27671650-27671823
Length = 732
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 396 LHWYQEPSTAGAGQGVRDPGYIPALRGKRG 485
L W + P+ GAG G PG +PA G
Sbjct: 4 LAWTRLPTADGAGAGAEGPGPVPASPSSAG 33
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -1
Query: 383 GLGCLVSPGPQAAQWQRAGVAT---RCGRTVPS 294
G GC + P P+ R+GVA R GRTV S
Sbjct: 114 GAGCAIRPRPRCGPRARSGVAAQQWRHGRTVAS 146
>05_07_0056 + 27382708-27383871,27384450-27384818
Length = 510
Score = 27.9 bits (59), Expect = 8.4
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -1
Query: 641 KKYFEHFYIIKCINIL 594
KKYF+H +I+K +N+L
Sbjct: 203 KKYFDHSFIVKLLNLL 218
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 501 LESWFLLASPEALEYIRDHVLP 436
L S+F + P+ E+ +DHVLP
Sbjct: 2279 LVSYFAIREPQKAEFYKDHVLP 2300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,684,412
Number of Sequences: 37544
Number of extensions: 469362
Number of successful extensions: 1764
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1762
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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