Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00875
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    27   0.13 
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              25   0.53 
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    25   0.53 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.8  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              22   5.0  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              22   5.0  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   5.0  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   8.7  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = -3

Query: 462 EYIRDHVLPVPLRLYWVLGTSVGCVTRFRVLSESGSAGGTVAARRRGDPVRSDRPVFARE 283
           EYI ++ LPV + + W     V  V R+R    +     ++   R G P  +  P +A+ 
Sbjct: 61  EYIPENALPVGIEI-WRNKLFV-TVPRWRNGIPATLTYISLDTNRGGSPKLTPYPNWAQN 118

Query: 282 SHGHA-AVLRA*QHSHADSCVPVWLL 208
             G   + +      HADSC  +W+L
Sbjct: 119 KAGACGSAITTAYRIHADSCDRLWVL 144


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +1

Query: 262 YSGVSVRLTCEDGTVRPHRVATPARCHCAACG 357
           Y    ++L  E+  V   ++  P  C C  CG
Sbjct: 110 YDADGIKLMNEENGVMEIKIREPVECKCIKCG 141


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +1

Query: 262 YSGVSVRLTCEDGTVRPHRVATPARCHCAACG 357
           Y    ++L  E+  V   ++  P  C C  CG
Sbjct: 110 YDADGIKLMNEENGVMEIKIREPVECKCIKCG 141


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 614 LYKSAQNIFSSNETKFYLISDIFL*NRKNNS 706
           LY  A+ +   N +K YL+S +F    +NN+
Sbjct: 220 LYNHARLMSQDNHSKEYLVSIMFSHYDRNNN 250


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 8   DIVNTTCCQICNEKPQALSKCVPKSIPSSDTVG 106
           D +N     + +EKPQ  ++C+ K     D  G
Sbjct: 45  DDINEVNFDVEDEKPQRYNECILKQFNIVDESG 77


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 8   DIVNTTCCQICNEKPQALSKCVPKSIPSSDTVG 106
           D +N     + +EKPQ  ++C+ K     D  G
Sbjct: 45  DDINEVNFDVEDEKPQRYNECILKQFNIVDESG 77


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +1

Query: 97  HCRS-DPHPDGSPRPVRQQVPHHRLHGVP 180
           HC +  P P G    +++QVP  R  G P
Sbjct: 351 HCGNFPPRPMGPWISIQEQVPRFRYIGPP 379


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -3

Query: 225 VPVWLL*IVPESQEPWHSVKPVMGNLLTHRPWAPIGMRIRP 103
           VP++     P S EPW S++  +       P  P    I P
Sbjct: 367 VPIYCGNFPPRSMEPWISMQEQIPRFRHIGPSTPFPRFIPP 407


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,035
Number of Sequences: 438
Number of extensions: 5013
Number of successful extensions: 23
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)