Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00874X
         (302 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   1.4  
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        26   1.4  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   2.4  
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          24   4.3  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    24   4.3  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    23   9.9  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    23   9.9  
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce...    23   9.9  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -2

Query: 289 FLHRIDKFIKNLMHFNSK*NRKGPILER 206
           +LH++D+FI+NL    S+ + KGPI  +
Sbjct: 435 YLHQLDEFIENL---KSEFDYKGPIARK 459


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +1

Query: 4   WHW-GSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 111
           W W GSVD  SG         N  R  S   TS+LR+
Sbjct: 39  WKWYGSVDEDSGYVYLTSKDSNEARSGSLWSTSVLRQ 75


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 187 TSPVLDIAPGSDLFCFIWN*NA 252
           T P+  + P  ++FC IW+ NA
Sbjct: 411 THPLRSVIPLDNIFCNIWSDNA 432


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -1

Query: 182 HHLMAWGLPWQQQSTVTQC 126
           H ++ WG  W++  T  +C
Sbjct: 160 HGVIGWGATWEKSKTQMEC 178


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = +2

Query: 11  GGLLTPLVAPVLXXXXXXXXXXXXXXXXXXYYGNLVAGSIVSQLTAAAMVAPTP*GDAKH 190
           G L+TP V PV+                    G    GSI++Q + A  V P P   +K 
Sbjct: 630 GALVTPSVPPVIATVSKTNTTNTGVQQRGNV-GVTTTGSILTQSSPALPVQPVPLAYSKP 688

Query: 191 HPFSTS 208
            P + S
Sbjct: 689 APTTKS 694


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 211 ERCRERVMFSITSWRGGYHGSSSQ 140
           E  R+RV FS+TS  G     SSQ
Sbjct: 77  EESRKRVSFSLTSNDGAKSDRSSQ 100


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 201 ENG*CLASPHGVGATMAAAVNCDTM 127
           ENG  L  P G GA +A A  C  +
Sbjct: 168 ENGTKLPCPDGYGAFLATACVCSLL 192


>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 395

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +1

Query: 118 GRQHCVTVDCCCHGSPHAM 174
           G  HC +V C   G P  M
Sbjct: 14  GESHCKSVGCIVEGCPPGM 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,230,715
Number of Sequences: 5004
Number of extensions: 20897
Number of successful extensions: 42
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)