Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00873
         (752 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   6.0  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    22   6.0  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   6.0  
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    22   6.0  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    22   6.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.0  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 497 LAYSCYISEFCAYFGRKSNRCWTLAYR 417
           L+Y+C   + C    R+ NRC    Y+
Sbjct: 118 LSYACREEKNCIIDKRQRNRCQYCRYQ 144


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 189 IRSARGAKNREACRYVRGAWSEVTP 263
           + +A  A   ++CRY  G  + VTP
Sbjct: 39  LAAAVDAATDKSCRYTAGLAANVTP 63


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 189 IRSARGAKNREACRYVRGAWSEVTP 263
           + +A  A   ++CRY  G  + VTP
Sbjct: 98  LAAAVDAATDKSCRYTAGLAANVTP 122


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 189 IRSARGAKNREACRYVRGAWSEVTP 263
           + +A  A   ++CRY  G  + VTP
Sbjct: 39  LAAAVDAATDKSCRYTAGLAANVTP 63


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 189 IRSARGAKNREACRYVRGAWSEVTP 263
           + +A  A   ++CRY  G  + VTP
Sbjct: 98  LAAAVDAATDKSCRYTAGLAANVTP 122


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 221 GMSICARCLERSDSKTNIRSRKLTLKKGDPA--NCE 322
           G+S   +   ++  + +I+ R  T ++GDPA   CE
Sbjct: 784 GLSAVIQISVQAPPQFDIKLRNQTSRRGDPAVLQCE 819


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,896
Number of Sequences: 336
Number of extensions: 3178
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)