Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00873
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1085 + 33989863-33991179 32 0.56
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741... 31 1.3
11_06_0711 - 26508228-26508488,26508970-26509084,26509179-265094... 30 2.3
08_01_1081 + 11058119-11059756 30 2.3
05_02_0157 + 7171791-7172030,7172635-7172667,7172966-7173037,717... 29 3.0
06_01_1164 + 9921555-9922661 29 5.2
04_04_0927 + 29467121-29467168,29467518-29467604,29468180-294682... 29 5.2
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275... 28 6.9
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774... 28 6.9
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556... 28 9.2
>02_05_1085 + 33989863-33991179
Length = 438
Score = 31.9 bits (69), Expect = 0.56
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +3
Query: 63 RSPLXIMELKYWWWMMXXXXXXXXXXXXXDGEV-WEENDHEVLIRSARGAK 212
RSP + +WWWMM DG + + E DH + + R A+
Sbjct: 208 RSPRIVSLKHHWWWMMNTVWDGLDETRDFDGHILFIEEDHYIFPNAYRNAQ 258
>07_03_1709 -
28873172-28873327,28873519-28873584,28874067-28874127,
28875406-28875462,28876301-28876531,28876685-28876799,
28876897-28877136,28877222-28877316,28877406-28877585,
28877663-28877839,28877920-28878890
Length = 782
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 320 HS*PDRPFSESTSLSGYSFWSHFAPSTAHISTCLSIFCAS 201
H+ PD PF+ T +G++ FAP+ A IS S C++
Sbjct: 596 HNLPDSPFASPTKSAGFA-RDPFAPTEAEISATASTGCSA 634
>11_06_0711 -
26508228-26508488,26508970-26509084,26509179-26509451,
26509629-26510197,26510489-26510597,26511002-26511544,
26511645-26511763,26511893-26512120,26512199-26512315,
26512410-26512506,26513169-26513569
Length = 943
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/62 (27%), Positives = 35/62 (56%)
Frame = +2
Query: 254 SDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKS 433
SD + ++R R+L + A E ++T++ C + + + S CS+ G+M+R + + S
Sbjct: 248 SDERNSLR-RQLWIWIHPSALSEGLETLRAACHQQMQESGDTISCCSLEGKMARLEVMGS 306
Query: 434 NS 439
N+
Sbjct: 307 NA 308
>08_01_1081 + 11058119-11059756
Length = 545
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = +2
Query: 230 ICARCLERSDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEM 409
+C + L+RSD N ++ K+G+ NC + + T K+ E +
Sbjct: 252 VCTKSLKRSDVDLNQNRLLISCKQGEVFNCPITHLFTG--EETIIVNKNP-DETKETKKK 308
Query: 410 SRTDKLKSNSDSTCDQSRRKT-RKCNKNKQVKLAKIRV 520
+ + K+N D ++ K +K NKN++ + ++V
Sbjct: 309 KKKKRRKNNDDDEEEEPGLKVKKKKNKNEEKERPGLKV 346
>05_02_0157 +
7171791-7172030,7172635-7172667,7172966-7173037,
7175212-7175310,7176135-7176194,7176347-7176463
Length = 206
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +2
Query: 470 TRKCNKNKQVKLAKIRVAEIASKDMGCFENFTIIINEQCLFVDSHLYLSLVP 625
T+K ++++V LAK+++ E+ + +F +++N + LF H L P
Sbjct: 145 TKKQERHRRVGLAKVKLKELILLKVADGLSFFLLVNRRLLFSSKHPTLEGYP 196
>06_01_1164 + 9921555-9922661
Length = 368
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +3
Query: 318 VKLLKPSRKSARELAAMKSHLGANAASMGRCPGPIS*SPTAIRLATKVGAKLG 476
+++ P R+ R + ++ H+ A AAS G G +RL +V A+ G
Sbjct: 279 LRVAGPVRRPLRRVRQLREHVAAAAASRGGAGGRAGAYRRGVRLGRRVVARSG 331
>04_04_0927 +
29467121-29467168,29467518-29467604,29468180-29468269,
29468547-29468741,29469056-29471080,29471208-29471354,
29471520-29471923,29472015-29472144
Length = 1041
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -1
Query: 224 CLSIFCASCASNENFMVILLPHLAICGNYRYR 129
C S+FC+SC SN+ M L P N RYR
Sbjct: 635 CGSMFCSSCTSNKITMAALAPDT----NRRYR 662
>05_01_0351 +
2750253-2751042,2751951-2751958,2752122-2752149,
2754692-2754775,2755780-2757548
Length = 892
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 180 HGHSPPTPRHLRQLPLPIRGPVLP 109
H H P PRH LPLP+ P P
Sbjct: 747 HQHQPYQPRHTDALPLPLPLPPPP 770
>04_04_1098 +
30876785-30876835,30876846-30877171,30877396-30877418,
30877687-30879392
Length = 701
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 329 KTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTR 475
KT++ + + +K S+ +G+ SR KL +SDS D +++K +
Sbjct: 214 KTLKDDRRHAKKGKKDKGSDAKSHGKSSRKIKLGHDSDSDHDDNKKKKK 262
>04_04_1107 -
30954647-30954769,30955052-30955141,30955309-30955617,
30955732-30955842,30955945-30956379,30956452-30956610,
30957044-30957994,30959016-30959483
Length = 881
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3
Query: 168 PPTPRHLRQLPLPIRGP 118
PP PR R LP+P RGP
Sbjct: 50 PPPPRPRRALPIPGRGP 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,889,663
Number of Sequences: 37544
Number of extensions: 351911
Number of successful extensions: 1020
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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