Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00873
(752 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z32683-4|CAA83629.1| 443|Caenorhabditis elegans Hypothetical pr... 33 0.22
Z81529-10|CAB04290.1| 338|Caenorhabditis elegans Hypothetical p... 30 1.5
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 30 1.5
AY204193-1|AAO39197.1| 338|Caenorhabditis elegans nuclear recep... 30 1.5
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 30 1.5
AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear recep... 30 2.0
AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear horm... 30 2.0
U40959-3|AAA81767.2| 445|Caenorhabditis elegans Hypothetical pr... 29 3.5
AC006712-10|AAK39322.2| 273|Caenorhabditis elegans Hypothetical... 29 3.5
AL110500-21|CAI79283.1| 197|Caenorhabditis elegans Hypothetical... 29 4.7
AF038606-8|AAB92022.2| 313|Caenorhabditis elegans Serpentine re... 28 6.2
Z54270-6|CAA91028.1| 572|Caenorhabditis elegans Hypothetical pr... 28 8.2
U93847-1|AAB58269.1| 760|Caenorhabditis elegans elongation fact... 28 8.2
U93846-1|AAB58268.1| 768|Caenorhabditis elegans elongation fact... 28 8.2
U10414-7|AAN63383.1| 768|Caenorhabditis elegans Elongation fact... 28 8.2
U10414-6|AAN63384.1| 760|Caenorhabditis elegans Elongation fact... 28 8.2
AF179216-1|AAF67040.1| 233|Caenorhabditis elegans NHR-25 protein. 28 8.2
AF179214-1|AAF67038.1| 568|Caenorhabditis elegans NHR-25 alpha ... 28 8.2
>Z32683-4|CAA83629.1| 443|Caenorhabditis elegans Hypothetical
protein R07E5.6 protein.
Length = 443
Score = 33.1 bits (72), Expect = 0.22
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Frame = +2
Query: 245 LERSDSKTNIRSRKLTLKKGDPANCEVVKTIQKKC----KRTCRYEKSSWSECSINGEMS 412
+++ D + K + K + EV + +KK KR +K+ + SIN EMS
Sbjct: 253 IKKKDEDEKAKKEKERIDKEEKIKKEVEEAEKKKKEEKEKRRKEVKKNREEQLSINPEMS 312
Query: 413 RTDKLKSNSDSTC-DQSRRKTRKCNKNKQV 499
R DK + +C D+ + +K K + V
Sbjct: 313 RNDKKDVVEEKSCLDKGAKDAQKKKKQQDV 342
>Z81529-10|CAB04290.1| 338|Caenorhabditis elegans Hypothetical
protein F35E8.12 protein.
Length = 338
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/87 (20%), Positives = 43/87 (49%)
Frame = +2
Query: 353 RTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQVKLAKIRVAEIA 532
RT +S ++ ++G DKL+++ D+ D+ + + CN + + +I + I+
Sbjct: 83 RTPVNRRSENNQTILSGLEKAYDKLENSRDNVFDRKNKIPKYCNHQELDDMFEIDIKLIS 142
Query: 533 SKDMGCFENFTIIINEQCLFVDSHLYL 613
+ + FE+ + + N Q + +H +
Sbjct: 143 THFIQFFESKSSLENNQNKVLSTHFII 169
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +2
Query: 374 SSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQVKL 505
S W CS+ R + + +++C + +T +CN N ++L
Sbjct: 1042 SEWGPCSVTCGSGRRVRTRGCQEASCPEQHIQTEECNLNSCLEL 1085
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +2
Query: 374 SSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQVKL 505
S W CS+ R + + +++C + +T +CN N ++L
Sbjct: 1042 SEWGPCSVTCGSGRRVRTRGCQEASCPEQHIQTEECNLNSCLEL 1085
>AY204193-1|AAO39197.1| 338|Caenorhabditis elegans nuclear receptor
NHR-108 protein.
Length = 338
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/87 (20%), Positives = 43/87 (49%)
Frame = +2
Query: 353 RTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQVKLAKIRVAEIA 532
RT +S ++ ++G DKL+++ D+ D+ + + CN + + +I + I+
Sbjct: 83 RTPVNRRSENNQTILSGLEKAYDKLENSRDNVFDRKNKIPKYCNHQELDDMFEIDIKLIS 142
Query: 533 SKDMGCFENFTIIINEQCLFVDSHLYL 613
+ + FE+ + + N Q + +H +
Sbjct: 143 THFIQFFESKSSLENNQNKVLSTHFII 169
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +2
Query: 374 SSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQVKL 505
S W CS+ R + + +++C + +T +CN N ++L
Sbjct: 1042 SEWGPCSVTCGSGRRVRTRGCQEASCPEQHIQTEECNLNSCLEL 1085
>AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear receptor
NHR-92 protein.
Length = 362
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 221 GMSICARCLERSDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEK 373
G +C+ C +T +R + K+ + NC +V TI+ CK+ CRY K
Sbjct: 26 GGVVCSAC-SAFFRRTVVRGHEYRCKQME--NCLIVSTIRNMCKK-CRYTK 72
>AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 92 protein.
Length = 354
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 221 GMSICARCLERSDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEK 373
G +C+ C +T +R + K+ + NC +V TI+ CK+ CRY K
Sbjct: 18 GGVVCSAC-SAFFRRTVVRGHEYRCKQME--NCLIVSTIRNMCKK-CRYTK 64
>U40959-3|AAA81767.2| 445|Caenorhabditis elegans Hypothetical
protein B0310.3 protein.
Length = 445
Score = 29.1 bits (62), Expect = 3.5
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Frame = +2
Query: 239 RCLERSDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRT 418
R L+ + K +RK+ ++K P + E+ K + + + G
Sbjct: 127 RILKEAHFKAQQLNRKMVVQKSCPPDHEIKPVPSKFYQFDAITDFGFGGPVLLVGMQKDV 186
Query: 419 DKLKSNSDSTCDQSRRKTRK----CNKNKQVKLAKIRVAEIASK 538
+ +K + R+K RK CN K KLA+I VA+I K
Sbjct: 187 EVMKLETKEKARSGRKKNRKSKYKCNMYKMTKLAQI-VAKIPKK 229
>AC006712-10|AAK39322.2| 273|Caenorhabditis elegans Hypothetical
protein Y119C1B.1 protein.
Length = 273
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = +2
Query: 296 KKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTR 475
K P N + ++ K K T + +K S+ + + K+KS+ D S RKT
Sbjct: 189 KPSKPENDKSYYSVPSKDKSTSKKQKMLRSDMADSASPKSLKKIKSSKD-PLRSSSRKTT 247
Query: 476 KCNKNKQVKLAKIRVAEIASK 538
K +K + +K +A SK
Sbjct: 248 KPSKKLSGRSSKKNLASKKSK 268
>AL110500-21|CAI79283.1| 197|Caenorhabditis elegans Hypothetical
protein Y87G2A.20 protein.
Length = 197
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +2
Query: 296 KKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTR 475
KKG AN KT K KR + +K W++ + R K+ + D ++RK +
Sbjct: 24 KKGGKAN----KTKTKATKRKAQMKKK-WTKTAQKKRKERKKADKAKKKTKKDAAKRKKK 78
Query: 476 KCNKNKQVKLAK 511
+K K+ K K
Sbjct: 79 SKDKKKKQKAQK 90
>AF038606-8|AAB92022.2| 313|Caenorhabditis elegans Serpentine
receptor, class z protein60 protein.
Length = 313
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 272 YSFWSHFAPSTAHISTCLSIFCASCASNENFMVILLPHLAICG 144
Y F HF T +S IF A S F+V P++A+ G
Sbjct: 56 YPFTKHFFKMTVVMSILYVIFIAGMLSGVLFLVRKSPYIAVSG 98
>Z54270-6|CAA91028.1| 572|Caenorhabditis elegans Hypothetical
protein F11C1.6a protein.
Length = 572
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 221 GMSICARCLERSDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEK 373
G+ C C + K ++++K + ANC V +T +K+C +CR++K
Sbjct: 31 GLLTCESC--KGFFKRTVQNKKQYQCSAE-ANCHVDRTCRKRCP-SCRFQK 77
>U93847-1|AAB58269.1| 760|Caenorhabditis elegans elongation
factor-2 kinase EFK-1B isoform protein.
Length = 760
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 308 PANCEVVKTIQKKCKRTCRYEKSSW--SECSINGEMSRTDKLKSNSDSTCDQSRRKTRKC 481
P VV+ + + C E+ + SE S N + SR ++ ++ S+ D+S + RKC
Sbjct: 388 PECIPVVEQLCEPCSEDEEDEEEDYPRSEKSGNSQKSRRSRMSISTRSSGDESASRPRKC 447
>U93846-1|AAB58268.1| 768|Caenorhabditis elegans elongation
factor-2 kinase EFK-1A isoform protein.
Length = 768
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 308 PANCEVVKTIQKKCKRTCRYEKSSW--SECSINGEMSRTDKLKSNSDSTCDQSRRKTRKC 481
P VV+ + + C E+ + SE S N + SR ++ ++ S+ D+S + RKC
Sbjct: 388 PECIPVVEQLCEPCSEDEEDEEEDYPRSEKSGNSQKSRRSRMSISTRSSGDESASRPRKC 447
>U10414-7|AAN63383.1| 768|Caenorhabditis elegans Elongation factor
kinase protein1, isoform a protein.
Length = 768
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 308 PANCEVVKTIQKKCKRTCRYEKSSW--SECSINGEMSRTDKLKSNSDSTCDQSRRKTRKC 481
P VV+ + + C E+ + SE S N + SR ++ ++ S+ D+S + RKC
Sbjct: 388 PECIPVVEQLCEPCSEDEEDEEEDYPRSEKSGNSQKSRRSRMSISTRSSGDESASRPRKC 447
>U10414-6|AAN63384.1| 760|Caenorhabditis elegans Elongation factor
kinase protein1, isoform b protein.
Length = 760
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 308 PANCEVVKTIQKKCKRTCRYEKSSW--SECSINGEMSRTDKLKSNSDSTCDQSRRKTRKC 481
P VV+ + + C E+ + SE S N + SR ++ ++ S+ D+S + RKC
Sbjct: 388 PECIPVVEQLCEPCSEDEEDEEEDYPRSEKSGNSQKSRRSRMSISTRSSGDESASRPRKC 447
>AF179216-1|AAF67040.1| 233|Caenorhabditis elegans NHR-25 protein.
Length = 233
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 221 GMSICARCLERSDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEK 373
G+ C C + K ++++K + ANC V +T +K+C +CR++K
Sbjct: 31 GLLTCESC--KGFFKRTVQNKKQYQCSAE-ANCHVDRTCRKRCP-SCRFQK 77
>AF179214-1|AAF67038.1| 568|Caenorhabditis elegans NHR-25 alpha
protein.
Length = 568
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 221 GMSICARCLERSDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEK 373
G+ C C + K ++++K + ANC V +T +K+C +CR++K
Sbjct: 27 GLLTCESC--KGFFKRTVQNKKQYQCSAE-ANCHVDRTCRKRCP-SCRFQK 73
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,237,623
Number of Sequences: 27780
Number of extensions: 303608
Number of successful extensions: 863
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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