Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00873
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   5.4  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   5.4  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           22   7.1  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           22   7.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   9.4  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 497 LAYSCYISEFCAYFGRKSNRCWTLAYR 417
           L+Y+C   + C    R+ NRC    Y+
Sbjct: 142 LSYACREEKSCIIDKRQRNRCQYCRYQ 168


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 497 LAYSCYISEFCAYFGRKSNRCWTLAYR 417
           L+Y+C   + C    R+ NRC    Y+
Sbjct: 142 LSYACREEKSCIIDKRQRNRCQYCRYQ 168


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 425 LKSNSDSTCDQSRRKTRKCNKNKQVKLAKIRVAEIAS 535
           + S+ D+  DQ+   T +  K  Q   A +R  E+AS
Sbjct: 10  ISSSDDNRIDQATGLTERQKKLVQNTWAVVRKDEVAS 46


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 425 LKSNSDSTCDQSRRKTRKCNKNKQVKLAKIRVAEIAS 535
           + S+ D+  DQ+   T +  K  Q   A +R  E+AS
Sbjct: 10  ISSSDDNRIDQATGLTERQKKLVQNTWAVVRKDEVAS 46


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = +3

Query: 69  PLXIMELKYWWWMM 110
           P+   E+  WWW M
Sbjct: 357 PVCQNEMNKWWWNM 370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,993
Number of Sequences: 438
Number of extensions: 4628
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)