Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00872
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    32   0.068
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    29   0.64 
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ...    28   1.1  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    27   1.9  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    27   2.6  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.5  
SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyce...    26   4.5  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    25   7.9  

>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 32.3 bits (70), Expect = 0.068
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 372 VAVHCVAGLGRAPVMVAIALI-ELGMKYEEAVETIRDQRRG-AINAKHSRTWR 524
           V VHC AG+ R+  +VA  L+ E     EEA+  I ++R G + NA   R  R
Sbjct: 127 VLVHCFAGISRSVTLVAAYLMKENNWNTEEALSHINERRSGISPNANFLRQLR 179


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 351 ENKPESAVAVHCVAGLGRAPVMVAIALI 434
           E + +  +AVHC AGLGR   ++   LI
Sbjct: 275 EVEEDGVIAVHCKAGLGRTGCLIGAYLI 302


>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 400

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 366 SAVAVHCVAGLGRAPVMVAIALIELGMKYEEAVETIRDQRRGAINAKHS 512
           S + +  + G   A ++ A A  E+ ++  E +ETIRD      + +HS
Sbjct: 272 STINIGTIEGGAAANILAAEAKAEVFIRVAEDIETIRDIAEDLFDTEHS 320


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = +2

Query: 98  APSLIEYKGMRFLITDRPSDVSIQAYLQELRKHNVCTVVRVCEPSYDTAPLKARTSRCAT 277
           A S   YK M   +TDR   + +  +++ L  HN  +  R   PSY ++   +  +R   
Sbjct: 318 AGSASPYKTMS--LTDRAEPIVMNGHMRSL--HNATSPFRPFSPSYRSSDTHSPRTRSPN 373

Query: 278 SPTTTGPSRQPT 313
             T    S QP+
Sbjct: 374 VQTHKKTSSQPS 385


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = +2

Query: 185 LRKHNVCTVVRVCEPSYDTAPLKARTSR-CATSPTTTGPSRQPTS*RLVRDPQ 340
           L  H V ++VR   P + T PL A     C     T G  RQ      VRD Q
Sbjct: 271 LEAHKVQSIVRDSNPMFITLPLSAIAKHICQFLLRTKGKWRQAKKYTWVRDNQ 323


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 224 EPSYDT-APLKARTSRCATSPTTTGPSRQP 310
           E SY + A L +R+     SPT+TG S QP
Sbjct: 478 ESSYGSRAALSSRSQSNLLSPTSTGASNQP 507


>SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 648 LPCVSVCVKAELHSLSGRRR 589
           +PC+S CV AEL  L  R R
Sbjct: 97  IPCISDCVMAELEKLGIRYR 116


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +3

Query: 402 RAPVMVAIALIELGMKYEEAVETIRDQRRGAINAKHSRTWRSTDRSHVS 548
           + P+   +A + L +  +  V +  +     I  K S++WR   ++HVS
Sbjct: 413 KIPLQTKVAAVSLDITSQLLVSSDGETLYVHIYVKSSKSWRCMSQTHVS 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,956
Number of Sequences: 5004
Number of extensions: 41776
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)