Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00872
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0339 + 2603351-2603891,2604048-2604226 40 0.001
01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678 35 0.070
12_01_0482 - 3791630-3791698,3791983-3792124,3792202-3792344,379... 33 0.16
11_01_0311 + 2322511-2323527 32 0.38
08_02_0592 + 19064025-19066596,19067036-19067084,19068530-190686... 31 0.87
01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311 31 0.87
12_01_0078 - 639421-639624,639706-639876,640392-640597,640985-64... 31 1.1
11_01_0077 - 602192-602395,602477-602647,603161-603366,605457-60... 30 1.5
10_01_0141 - 1686827-1687063,1687160-1687315,1688046-1688974,168... 29 4.6
04_04_0055 + 22403608-22403865,22403977-22404075,22404172-224042... 29 4.6
11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45... 28 8.1
08_02_0417 - 16904476-16904662,16904846-16905029,16905150-169058... 28 8.1
07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708 28 8.1
>12_01_0339 + 2603351-2603891,2604048-2604226
Length = 239
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Frame = +3
Query: 345 KAENKPESAVAVHCVAGLGRAPVMVAIALIELGM--KYEEAVETIRDQRRGAINAKHSRT 518
+A+ KP V VHC G GR+ +V L+ LG+ +++A IR++R+ +NA H +T
Sbjct: 168 RAKGKP---VYVHCAFGHGRSACVVCAVLVALGIAENWKDAENIIREKRKIKMNAVHRKT 224
Query: 519 WRSTDRSHVSRR 554
+ S++
Sbjct: 225 LDDWSKYRASQK 236
>01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678
Length = 261
Score = 34.7 bits (76), Expect = 0.070
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Frame = +3
Query: 336 LRDKAENKPESAVAVHCVAGLGRAPVMVAIALIELGM--KYEEAVETIRDQRRG-AINAK 506
LR +++NK AV VHC G GR+ ++ L+ LG+ ++ A + IR++R ++N+
Sbjct: 166 LRKRSQNK---AVYVHCAYGHGRSVCVMCALLVALGLAEDWKAAEQMIREKRPSISMNSL 222
Query: 507 HSRT 518
H ++
Sbjct: 223 HRKS 226
>12_01_0482 -
3791630-3791698,3791983-3792124,3792202-3792344,
3792833-3792958,3794307-3794444,3794540-3794622,
3794738-3794825,3796147-3796344
Length = 328
Score = 33.5 bits (73), Expect = 0.16
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Frame = +3
Query: 336 LRDKAENKP-ESAVAVHCVAGLGRAPVMVAI-ALIE---LGMK----YEEAVETIRDQRR 488
+R +N P E + VHC AG+GR + I + IE LG K +E V+T+R QR
Sbjct: 241 IRKWLQNTPMEHPIVVHCSAGIGRTGAYITIHSTIERLLLGDKSSYHLDETVKTLRTQRV 300
Query: 489 GAINAK 506
G + +
Sbjct: 301 GMVQTE 306
>11_01_0311 + 2322511-2323527
Length = 338
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 212 VRVCEPSYDTAPLKARTSRCATSPTTTGPSRQPT 313
VRV + + TAP R S C++S +TT S PT
Sbjct: 25 VRVADVAACTAPSSTRVSTCSSSSSTTASSSSPT 58
>08_02_0592 +
19064025-19066596,19067036-19067084,19068530-19068605,
19068767-19068922
Length = 950
Score = 31.1 bits (67), Expect = 0.87
Identities = 26/68 (38%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = +1
Query: 121 GDALPHHRPPIGRVHSGVSAG--VEEAQRVHGGARVRAELRHGAAEGENIEVRDLAYDDG 294
GDA P PP R V+AG E RV G R HG AEGE V + D
Sbjct: 20 GDARPARSPPPRRRRPDVAAGWRGEGTSRVRG--RGEKGTTHGGAEGEGAVVAPVRTADA 77
Query: 295 TFPPANVV 318
P N V
Sbjct: 78 V-PARNAV 84
>01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311
Length = 705
Score = 31.1 bits (67), Expect = 0.87
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = -2
Query: 180 CRYA*MDTSDGRSVMRKRIPLYSMREGAGLMSFCFMVTAASLLLGEIEAGSGSHFRTR 7
C A +DT+DG + ++++PL R G G F AAS LG G+ H R R
Sbjct: 376 CVAALLDTNDG-TCTKQQLPLRYGRAGGGYTMFVKTGGAASPALGGGGGGNHHHHRLR 432
>12_01_0078 -
639421-639624,639706-639876,640392-640597,640985-641100,
641669-641855,642104-642338
Length = 372
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 348 AENKPESAVAVHCVAGLGRAP-VMVAIALIELGMKYEEAVETIRDQR 485
A ++ + V VHC AGLGRAP V +A M + A E + +R
Sbjct: 271 AISEGKGRVYVHCTAGLGRAPAVAIAYMFWFENMNLKTAYEKLTSKR 317
>11_01_0077 -
602192-602395,602477-602647,603161-603366,605457-605682
Length = 268
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +3
Query: 348 AENKPESAVAVHCVAGLGRAPVMVAIA 428
A ++ + V VHC AGLGRAP VAIA
Sbjct: 167 AISEGKGRVYVHCTAGLGRAPA-VAIA 192
>10_01_0141 -
1686827-1687063,1687160-1687315,1688046-1688974,
1689595-1689640,1689914-1689932,1690751-1690962,
1691063-1691218,1692240-1693184,1693448-1693597
Length = 949
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +1
Query: 106 PHRVQGDALPHHRPPIGRVHSGVSAGVEEAQRVHGGARVRAELR 237
P +V DA P PP+ R S VSA ++ H RV+A +R
Sbjct: 43 PRQVPTDAFPR-APPVRRNASSVSATMDRRPGRHKLRRVKAHVR 85
>04_04_0055 +
22403608-22403865,22403977-22404075,22404172-22404213,
22404350-22404479,22405118-22405219,22405960-22406066
Length = 245
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 142 GDEEAHPLVLDEGRRRSNVLLLHGHR 65
G+E A P EG RR L LHG R
Sbjct: 6 GEEGARPAAAAEGARRPRFLCLHGFR 31
>11_01_0059 -
444991-446908,447595-448218,448431-448861,450974-452293
Length = 1430
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Frame = +3
Query: 297 LPASQRRRDWFEILRDK-------AENKPESAVAVHCVAGLGRAPVMVAIALI 434
+PA+ RRR W E+ +N+P+ AV + GLG P++ A+ ++
Sbjct: 560 VPAASRRRRWTEVANQMLNALFTIIDNRPDLAVNLCMALGLG-FPIVAALYMV 611
>08_02_0417 -
16904476-16904662,16904846-16905029,16905150-16905897,
16906003-16906227,16906318-16906485,16906803-16907453
Length = 720
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +2
Query: 215 RVCEPSYDTAPLKARTSRCATSPTTTGPSRQPTS 316
R+ PS +P+ ARTS SPT PS P S
Sbjct: 529 RIPSPS-PQSPVSARTSSATPSPTARTPSPAPPS 561
>07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708
Length = 2033
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 78 FMVTAASLLLGEIEAGSGSHF 16
F + S+++G+I AG GSHF
Sbjct: 460 FSIRRRSIIVGQITAGDGSHF 480
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,706,687
Number of Sequences: 37544
Number of extensions: 352477
Number of successful extensions: 1290
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -