Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00872
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.8  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    23   3.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.8  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   6.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.4  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 124 PLVLDEGRRRSNVLLLHGHRCFSSAGRDRSRLGQSLPH 11
           P+    G+  +N   LH   C S +   +SRL + L H
Sbjct: 116 PVCASNGKIYANHCELHRAACHSGSSLTKSRLMRCLHH 153


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 324 WFEILRDKAENKPESAVAVHCVA 392
           WFEI RD    K     A  C A
Sbjct: 31  WFEIWRDSLPTKMRELNATACAA 53


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 549 LRRDFGRYFSKY 514
           L++DFG YF +Y
Sbjct: 10  LKKDFGTYFQQY 21


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 229  ELRHGAAEGENIEVRDLAYDDGTFPPANVVETG 327
            ELRHG  +G N+  R+ +  + ++  ++V   G
Sbjct: 1033 ELRHGDIQGFNVGYRETSSSNPSYNFSSVSGDG 1065


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 229  ELRHGAAEGENIEVRDLAYDDGTFPPANVVETG 327
            ELRHG  +G N+  R+ +  + ++  ++V   G
Sbjct: 1029 ELRHGDIQGFNVGYRETSSSNPSYNFSSVSGDG 1061


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 187 QLLQIRLNGHVRWAVGDEEAHPLVL 113
           QLL   +NG     +GD E   L++
Sbjct: 189 QLLSCEVNGSTLVYIGDNEGFALII 213


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 406 ARPSPATQCTAT 371
           A PSPA QC +T
Sbjct: 743 ASPSPAEQCAST 754


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,606
Number of Sequences: 438
Number of extensions: 3057
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)