BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00870
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 86 5e-18
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 42 1e-04
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 40 4e-04
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 35 0.009
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 34 0.020
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 32 0.062
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 32 0.083
SPAC823.10c |||mitochondrial carrier with solute carrier repeats... 31 0.11
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 31 0.19
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 31 0.19
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 30 0.25
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo... 30 0.33
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 29 0.58
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M... 29 0.77
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 28 1.3
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 27 1.8
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 1.8
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 27 2.3
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 27 2.3
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5... 26 4.1
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo... 26 5.4
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 26 5.4
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 5.4
SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyce... 25 9.5
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 85.8 bits (203), Expect = 5e-18
Identities = 45/102 (44%), Positives = 60/102 (58%)
Frame = +1
Query: 187 QADRRRPALQGYRRCLRPYPQGAGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGG 366
+A R +G C + G++S WRGN ANV+RYFPTQALNFAFKDK+K++F G
Sbjct: 63 RAGRLSHRYKGIGECFKRTAAEEGVISLWRGNTANVLRYFPTQALNFAFKDKFKKMF-GY 121
Query: 367 VDKKTQFWRYFXXXXXXXXXXXXTSLCFV*PLDFARTRLAAD 492
++ + ++F SL FV LD+ARTRLA D
Sbjct: 122 KKERDGYAKWFAGNLASGGAAGAASLLFVYSLDYARTRLAND 163
Score = 58.0 bits (134), Expect = 1e-09
Identities = 32/58 (55%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Frame = +2
Query: 83 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKE 253
F DF+ GG+SAAVSKTA APIERVKLL+Q Q + + RYKGI + F R E
Sbjct: 27 FFFDFMMGGVSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAE 84
Score = 50.4 bits (115), Expect = 2e-07
Identities = 23/44 (52%), Positives = 30/44 (68%)
Frame = +3
Query: 516 EFSGLGNCISKIFKSDGLIGLYRGFGVSVQRIII*RASYFRFYD 647
+F+GL + K ++SDGL GLYRGFG SV I++ R YF YD
Sbjct: 174 QFNGLVDVYRKTYRSDGLRGLYRGFGPSVVGIVVYRGLYFGMYD 217
Score = 30.3 bits (65), Expect = 0.25
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 519 FSGLGNCISKIFKSDGLIGLYRGFGVSVQRIII*RASYFRFYD 647
+ G+G C + +G+I L+RG +V R +A F F D
Sbjct: 71 YKGIGECFKRTAAEEGVISLWRGNTANVLRYFPTQALNFAFKD 113
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 41.5 bits (93), Expect = 1e-04
Identities = 16/28 (57%), Positives = 26/28 (92%)
Frame = +2
Query: 98 LAGGISAAVSKTAVAPIERVKLLLQVQH 181
L+GG++A VS+TAV+P+ER+K++ QVQ+
Sbjct: 25 LSGGVAATVSRTAVSPLERMKIIFQVQN 52
Score = 32.7 bits (71), Expect = 0.047
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = +1
Query: 256 GLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXX 435
GL+ F+RGN N +R FP A+ FA + KQ L K
Sbjct: 71 GLIGFFRGNGTNCLRAFPYGAVQFATFNMLKQRAL----KNRSHQNLENHERLLFGAIAG 126
Query: 436 TSLCFV*-PLDFARTRLAAD 492
+ C PLD ARTRL+ +
Sbjct: 127 AASCATTYPLDIARTRLSIE 146
Score = 30.3 bits (65), Expect = 0.25
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 516 EFSGLGNCISKIFKSDGLIGLYRGFGVSVQRIII*RASYFRFYDM 650
E++ L + + KI+ +GLIG +RG G + R A F ++M
Sbjct: 55 EYTSLTSTLVKIWNREGLIGFFRGNGTNCLRAFPYGAVQFATFNM 99
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = +3
Query: 519 FSGLGNCISKIFKSDGLIGLYRGFGVSVQRII 614
+ + + I I+K++G+ G +RG+ ++ +II
Sbjct: 266 YKNIKSAIFHIYKTEGINGFFRGYSSNMLKII 297
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 39.5 bits (88), Expect = 4e-04
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +2
Query: 89 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRI 244
K +AGG + V+K+ VAP++RVK+L Q H S + A R+ G+ A I
Sbjct: 19 KSGIAGGTAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHI 69
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 35.1 bits (77), Expect = 0.009
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +3
Query: 516 EFSGLGNCISKIFKSDGLIGLYRGFGVSVQRIII*RASYF 635
+++G +C +KI K + ++ LY GF ++ R ++ A YF
Sbjct: 140 KYNGTVDCFTKIVKQERILALYNGFEATMWRHVVWNAGYF 179
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +1
Query: 181 RQQADRRRPALQGYRRCLRPYPQGAGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 357
R Q + G CL+ + G +RG ++ P +AL FA D Y +++
Sbjct: 35 RMQLSVGKSDYNGTFDCLKKIVKNEGPHRLYRGILPPILMEAPKRALKFASNDTYSKLW 93
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 516 EFSGLGNCISKIFKSDGLIGLYRG 587
+++G +C+ KI K++G LYRG
Sbjct: 44 DYNGTFDCLKKIVKNEGPHRLYRG 67
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 86 AKDFLAGGISAAVSKTAVAPIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKE 253
A L G + V P E +K+ LQ V++ SK Y G VD F +I K+
Sbjct: 105 ALSILTGSCAGFTETFVVVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQ 154
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 33.9 bits (74), Expect = 0.020
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +2
Query: 71 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLL 169
DP F++GGI+ VS+T AP++R+K++L
Sbjct: 123 DPKNNVGYFISGGIAGIVSRTCTAPLDRLKVML 155
Score = 27.1 bits (57), Expect = 2.3
Identities = 9/32 (28%), Positives = 22/32 (68%)
Frame = +2
Query: 95 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSK 190
+LAGG++ +V++ + P++ +K +Q +S+
Sbjct: 232 YLAGGMAGSVAQMFIYPVDTLKFRIQCSDLSR 263
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 32.3 bits (70), Expect = 0.062
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +3
Query: 525 GLGNCISKIFKSDGLIGLYRGFG 593
G+ + + ++KS+GL+GL+RGFG
Sbjct: 283 GIRHVLGGLYKSEGLLGLFRGFG 305
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 31.9 bits (69), Expect = 0.083
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 534 NCISKIFKSDGLIGLYRGFGVSVQRI 611
+CI K +S+G LY+GFG + RI
Sbjct: 271 DCILKTIRSEGFFALYKGFGAHLARI 296
Score = 29.9 bits (64), Expect = 0.33
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 95 FLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPK 250
FL+GG++A + T P E +K Q+Q ++K + + YK + AF I +
Sbjct: 27 FLSGGLAACGAVTLTNPFEVIKTRFQLQGQLTKLDPSKRIYKSVGQAFSLIAR 79
>SPAC823.10c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 31.5 bits (68), Expect = 0.11
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 519 FSGLGNCISKIFKSDGLIGLYRGFGVSVQRIII*RASYFRFYDM 650
++ + + I I+K +G+ G +RGFGV+ R Y FY++
Sbjct: 141 YTTIYSSIRDIWKKEGISGFFRGFGVTALRDAPHAGLYVYFYEL 184
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 30.7 bits (66), Expect = 0.19
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 74 PVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ 178
PV + +++G IS + V P+E V++ LQ+Q
Sbjct: 109 PVTMPQYYVSGAISGLANSFLVGPVEHVRIRLQIQ 143
Score = 29.1 bits (62), Expect = 0.58
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +2
Query: 80 AFAKDFLAGGISAAVSKTAVA-PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKER 256
+F KDFLA G+S V++ V P + VK+ LQ Q I Y +D +I K
Sbjct: 16 SFTKDFLA-GVSGGVAQVLVGQPFDCVKVRLQSQSNVSPI-----YNNALDCVKKISKNE 69
Query: 257 --VSFHSGVV 280
+F+ G V
Sbjct: 70 GLAAFYKGTV 79
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 519 FSGLGNCISKIFKSDGLIGLYRGFGVSVQRIII*RASYFRFYD 647
+ G +CI KI GL G+ +G+ + R YF Y+
Sbjct: 150 YHGPWDCIKKISSQYGLSGIMKGYNPTAAREAHGLGMYFLAYE 192
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 534 NCISKIFKSDGLIGLYRG 587
+C+ KI K++GL Y+G
Sbjct: 60 DCVKKISKNEGLAAFYKG 77
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 30.7 bits (66), Expect = 0.19
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +2
Query: 98 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVD 229
++GG+S A++ + P++ VK LLQ + S I ++ KG +D
Sbjct: 209 ISGGLSGAIASSLTTPLDVVKTLLQTRG-SSSIPEVRKCKGSLD 251
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 30.3 bits (65), Expect = 0.25
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 32 VKIT*SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQ 172
V +T +N SN P + F+AGG++ + A AP++ VK LQ
Sbjct: 32 VLLTKANNASNERAPPPLSH-FIAGGVAGMLGAIATAPLDVVKTRLQ 77
>SPBC29A3.11c |||mitochondrial carboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 29.9 bits (64), Expect = 0.33
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 519 FSGLGNCISKIFKSDGLIGLYRGFGVSVQRIII*RASYFRFYD 647
F + +C K++GL GLYRG + + + R+ F YD
Sbjct: 50 FPTIRSCFQNAVKNEGLKGLYRGLTLPLISATLSRSVSFTVYD 92
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 29.1 bits (62), Expect = 0.58
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 98 LAGGISAAVSKTAVAPIERVKLLLQVQHVS 187
LAGGIS+ + + +AP + +K+ +Q+ S
Sbjct: 21 LAGGISSVICRFMIAPFDVIKIRMQITQSS 50
>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 531
Score = 28.7 bits (61), Expect = 0.77
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 562 SDLKILLMQFPRPENSRWHLPYRHRRR 482
S L ++++ F PE S WHL Y+ +R
Sbjct: 250 SALVLVIITFFMPETSEWHLLYKRAKR 276
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 89 KDFLAGGISAAVSKTAVAPIERVKLLLQVQ 178
KD +AGG + S VAP++ VK Q Q
Sbjct: 7 KDAIAGGAAGLASSLVVAPLDVVKTRKQAQ 36
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +1
Query: 211 LQGYRRCLRPYPQGAGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKK 378
L G +R G+ +RG ++ Y P+ ++ F +K K +F GV+KK
Sbjct: 51 LGGTLSSMRTIFHNEGIAGLYRGVGPMMLGYLPSWSIYFVVYEKCKVLF--GVNKK 104
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 27.5 bits (58), Expect = 1.8
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Frame = -3
Query: 523 ENSRWHLPYRH---RRRDGYVRSRGATRSTERWL-RRHHRRPD--YQRSNARTASSCQHR 362
++SR H+ + R R Y +R RS+ R R +HRR D Y RSN R +HR
Sbjct: 311 DDSRIHVDFSQSVARYRQYYNSNRDRKRSSSRSDDREYHRRSDGRYDRSNYR--DDYRHR 368
Query: 361 R 359
R
Sbjct: 369 R 369
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -3
Query: 502 PYRHRRRDGYVRSRGATRSTERWLRRHHRRPDYQRSNARTASSCQHRR 359
P R R RD RS ++RS R HR DY RS ++ + RR
Sbjct: 145 PVRSRDRD---RSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSRR 189
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 525 GLGNCISKIFKSDGLIGLYRGFGVSVQRIII*RASYFRFYD 647
G G ++I+K G GL+ G GV + I + + YD
Sbjct: 258 GAGAAAARIYKEIGFSGLWNGLGVRIVMIGTLTGAQWLIYD 298
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 534 NCISKIFKSDGLIGLYRGFGVSV 602
N IS + +S+GL G YRG+ + V
Sbjct: 121 NTISTLARSEGLKGFYRGYWMGV 143
>SPBC609.04 |caf5||spermine family transmembrane transporter
Caf5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3
Query: 562 SDLKILLMQFPRPENSRWHLPYRHRRR 482
S ++++ F PE S WH+ Y+ +R
Sbjct: 250 SGFALIVIFFFMPETSEWHILYKRAKR 276
>SPBC83.13 |||mitochondrial tricarboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 525 GLGNCISKIFKSDGLIGLYRG 587
G+ I I+K++G+ GLYRG
Sbjct: 245 GIMQTIMSIYKNNGIKGLYRG 265
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = -2
Query: 518 FTLASPLPTSA--ARRVRAKSRGYTK 447
FTL++P PTSA A R SRG T+
Sbjct: 414 FTLSNPAPTSARPATSTRTISRGKTR 439
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 237 TKASTIPL*RWSAAICLLTCCTWSSSLTRSMGATAV 130
T+ + + + WSA I +LT C SLT S+ T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568
>SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 132
Score = 25.0 bits (52), Expect = 9.5
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = -2
Query: 647 VVETEV*GTLDDDTLHGHTETSVQTDQTVGLEDLADAVSETGEFTLASPLPTSAARRVRA 468
++E EV GTLD + HG T + +D + + EF SA RR+R
Sbjct: 50 LLEGEVDGTLDPEMTHG---TKPKEHGEFDTDDEEEEENPDAEFRWG----YSARRRIRK 102
Query: 467 KSRGYTKHRE 438
+ Y K+++
Sbjct: 103 QREEYFKNQD 112
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,217,805
Number of Sequences: 5004
Number of extensions: 38143
Number of successful extensions: 180
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -