Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00870
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   138   4e-35
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   138   4e-35
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.9  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   3.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.5  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  138 bits (334), Expect = 4e-35
 Identities = 67/96 (69%), Positives = 70/96 (72%)
 Frame = +1

Query: 214 QGYRRCLRPYPQGAGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWR 393
           +G   C    P+  G LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF R
Sbjct: 54  KGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLR 113

Query: 394 YFXXXXXXXXXXXXTSLCFV*PLDFARTRLAADVGK 501
           YF            TSLCFV PLDFARTRLAADVGK
Sbjct: 114 YFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGK 149



 Score =  118 bits (284), Expect = 5e-29
 Identities = 54/67 (80%), Positives = 63/67 (94%)
 Frame = +2

Query: 56  MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 235
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 236 VRIPKER 256
           VRIPKE+
Sbjct: 61  VRIPKEQ 67



 Score = 77.8 bits (183), Expect = 9e-17
 Identities = 34/44 (77%), Positives = 40/44 (90%)
 Frame = +3

Query: 516 EFSGLGNCISKIFKSDGLIGLYRGFGVSVQRIII*RASYFRFYD 647
           EF+GLGNC++KIFK+DG+ GLYRGFGVSVQ III RA+YF FYD
Sbjct: 155 EFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYD 198


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  138 bits (334), Expect = 4e-35
 Identities = 67/96 (69%), Positives = 70/96 (72%)
 Frame = +1

Query: 214 QGYRRCLRPYPQGAGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWR 393
           +G   C    P+  G LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF R
Sbjct: 54  KGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLR 113

Query: 394 YFXXXXXXXXXXXXTSLCFV*PLDFARTRLAADVGK 501
           YF            TSLCFV PLDFARTRLAADVGK
Sbjct: 114 YFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGK 149



 Score =  118 bits (284), Expect = 5e-29
 Identities = 54/67 (80%), Positives = 63/67 (94%)
 Frame = +2

Query: 56  MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 235
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 236 VRIPKER 256
           VRIPKE+
Sbjct: 61  VRIPKEQ 67



 Score = 77.8 bits (183), Expect = 9e-17
 Identities = 34/44 (77%), Positives = 40/44 (90%)
 Frame = +3

Query: 516 EFSGLGNCISKIFKSDGLIGLYRGFGVSVQRIII*RASYFRFYD 647
           EF+GLGNC++KIFK+DG+ GLYRGFGVSVQ III RA+YF FYD
Sbjct: 155 EFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYD 198


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = -3

Query: 529 RPENSRWHLPYRHRRRDGYVRSRGATRSTERW 434
           R EN   H P RH RR        A R    W
Sbjct: 74  RFENPETHHPIRHGRRQSRSMDLNAHREQMSW 105


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 289 WRSYHARMKGDPLLGDTDEG 230
           WR  H+    DPL GD + G
Sbjct: 228 WRITHSYFMPDPLAGDYNIG 247


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 314 WVGKYLMTLAKLPRQNERRPAPWGYGR 234
           WVG     LA+L R  ER+     +GR
Sbjct: 228 WVGGESEALARLERHLERKAWVASFGR 254


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,251
Number of Sequences: 438
Number of extensions: 2610
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)