Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00869
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    28   0.70 
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    27   2.1  
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch...    27   2.1  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   3.7  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   3.7  
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual          25   4.9  
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    25   8.6  
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce...    25   8.6  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    25   8.6  

>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 28.3 bits (60), Expect = 0.70
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 64  VSVTKSVNDKFETAPIKSEDIEDKKERDKSL 156
           + V    +D + ++P+K ED+EDK +  KS+
Sbjct: 326 MGVVDVTSDIYHSSPVKGEDLEDKFQLAKSV 356


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 255 GRMISQAHGRRHSPDVLSGVTKDVPMKS 338
           G+ IS + G    P VLSGVT+D+ + S
Sbjct: 367 GKEISSSKGYFFEPTVLSGVTQDMLVAS 394


>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 40  HVESKSF--DVSVTKSVNDKFETAPIKSEDIEDKKERD 147
           H++ + F   +SV KSV +K +T  ++++D     E+D
Sbjct: 54  HLQDRGFATPISVIKSVTNKIDTNKLEAKDESKNVEKD 91


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 424 LNLTRPVAQSFTSNTDIVRKFVRPSLSVTLFIGTSL-VTPLNTSG-ECLRP 278
           L L  P+A       D++   V P+L  TL IGT+  ++ L   G  C+ P
Sbjct: 554 LTLGVPIATIIIRALDLITIVVPPALPATLTIGTTFAISRLRKQGIFCISP 604


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +1

Query: 97  ETAPIKSEDIEDKKERDKSLGITTDSTRTQHRGTPRALTLAELEDMK 237
           E A I++++ + KKER++ + +  +S          +   +E ED+K
Sbjct: 398 EAAKIRADEEKKKKEREEQVRLLQESADKDAEMNEASTATSENEDLK 444


>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -2

Query: 147 ISLFLIFYVFRFYWRRFKF 91
           +++F  FY+  + W+RF++
Sbjct: 311 VAIFSFFYLLLYLWKRFRY 329


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -3

Query: 116 DFIGAVSNLSLTDLVTLTSKLFD 48
           DF  AV NLSL DL    S  FD
Sbjct: 403 DFGEAVGNLSLVDLEPTLSSKFD 425


>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 456

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 260 STTALAGFFISSSSANVSALGVPLCCVLVESVVI 159
           STT+      SSS +  S +GV  C  L  +V+I
Sbjct: 418 STTSYTSGMTSSSESGSSKIGVAFCQALFITVLI 451


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 367 KFVRPSLSVTLFIGTSLVTPLNTSGECLRP*A*LIILPQ 251
           +F  P+ S  +F  TSL  P+N +G  ++P A  +  PQ
Sbjct: 331 QFSLPNNSQPVFGHTSLTQPVNPNGFTVQPPATFMQQPQ 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,571
Number of Sequences: 5004
Number of extensions: 31321
Number of successful extensions: 110
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)