Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00869
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0076 + 14350020-14350164,14351020-14351129,14351436-143516...    30   0.93 
05_03_0498 - 14720989-14722119,14722225-14722839                       29   2.8  
01_06_1340 + 36424426-36424542,36425212-36425283,36425383-364254...    28   3.7  
10_08_0928 + 21617977-21618157,21618260-21618378,21618653-216187...    28   5.0  

>09_04_0076 + 14350020-14350164,14351020-14351129,14351436-14351601,
            14351740-14351840,14351960-14352032,14352111-14352252,
            14353239-14353399,14354017-14354129,14354226-14354325,
            14354580-14354676,14354798-14354849,14355074-14355175,
            14355256-14355402,14355485-14355656,14355752-14355991,
            14356565-14356621,14356853-14356942,14357089-14357284,
            14358117-14358228,14358305-14358459,14359155-14360580,
            14360663-14360857,14361214-14361684
          Length = 1540

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 67   SVTKSVNDKFETAPIKSE-DIEDKKERDKSLGITTDSTRTQH-RGTPRALTLAELE 228
            S TK ++ +    P  S  D+   KE  K LG+    TRT+   GTP+ L  A ++
Sbjct: 1070 SKTKKIHIRIRDKPAASTVDVNKLKEATKQLGLGPPITRTRSLSGTPQELNQAPMQ 1125


>05_03_0498 - 14720989-14722119,14722225-14722839
          Length = 581

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = -3

Query: 350 FICNAFHWYVFSNSTQHIWRMSSTVSLTYHSTTALAGF 237
           F  N F W VF N  +  W  +    L Y    AL  F
Sbjct: 260 FFTNNFDWAVFENELKWYWTEAQRGLLNYRDADALLDF 297


>01_06_1340 +
           36424426-36424542,36425212-36425283,36425383-36425486,
           36425567-36425669,36425757-36425918,36426043-36426320,
           36429428-36429578,36429795-36429959,36430077-36430154,
           36430284-36430373,36430460-36430546,36430636-36430722,
           36430779-36430890,36431033-36431136,36431435-36431510,
           36431954-36432104,36432246-36432314,36432408-36432474,
           36433060-36433089
          Length = 700

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 418 LTRPVAQSFTSNTDIVRKFVRPSLSVTLFIGTSLVTPLN 302
           L   VA++   NTD  R FV+    + + +GT++VT  N
Sbjct: 11  LVAAVAKADVENTDSTRGFVKDVKRIIIKVGTAVVTGPN 49


>10_08_0928 +
           21617977-21618157,21618260-21618378,21618653-21618774,
           21618853-21619049,21619350-21619603,21619779-21619880,
           21619976-21620404,21620611-21621369,21621586-21621771
          Length = 782

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 154 LGITTDSTRTQHRGTPRALTLAELEDMKKPANAV 255
           LG++    R++HR   +   L ELE +KK A+AV
Sbjct: 667 LGLSCLEMRSKHRPDLKCKVLVELERLKKIASAV 700


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,830,658
Number of Sequences: 37544
Number of extensions: 166852
Number of successful extensions: 411
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)