Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00868
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium chann...    31   0.60 
Z82082-11|CAH10808.1|  721|Caenorhabditis elegans Hypothetical p...    30   1.8  
Z82082-9|CAB04966.2|  586|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AL132902-16|CAB82004.2|  721|Caenorhabditis elegans Hypothetical...    30   1.8  
Z81485-3|CAB03977.1|  258|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 2 protein.
          Length = 675

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +3

Query: 123 WRAHASRNQEPIRRITHFV*HASTILVPIIFIPRAYICKSILKEKLQKNETI 278
           WR H + N +P RR T+FV     + V    I +  +    L+EKL+K   I
Sbjct: 357 WRYHLATNWKPPRRYTYFVHVCYKLYVTEERINQNRVLAKKLREKLEKKRPI 408


>Z82082-11|CAH10808.1|  721|Caenorhabditis elegans Hypothetical
           protein Y71A12B.12a protein.
          Length = 721

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 451 VCKMKLVKSKYLRIFVLFGNIDCID 525
           +C +K  K+++ +IF  F N+DC+D
Sbjct: 159 LCGLKFYKTEFSKIFPSFVNLDCLD 183


>Z82082-9|CAB04966.2|  586|Caenorhabditis elegans Hypothetical
           protein Y71A12B.12b protein.
          Length = 586

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 451 VCKMKLVKSKYLRIFVLFGNIDCID 525
           +C +K  K+++ +IF  F N+DC+D
Sbjct: 24  LCGLKFYKTEFSKIFPSFVNLDCLD 48


>AL132902-16|CAB82004.2|  721|Caenorhabditis elegans Hypothetical
           protein Y71A12B.12a protein.
          Length = 721

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 451 VCKMKLVKSKYLRIFVLFGNIDCID 525
           +C +K  K+++ +IF  F N+DC+D
Sbjct: 159 LCGLKFYKTEFSKIFPSFVNLDCLD 183


>Z81485-3|CAB03977.1|  258|Caenorhabditis elegans Hypothetical
           protein C49F5.3 protein.
          Length = 258

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 234 CKSILKEKLQKNETIPSLFSYD 299
           C+SI K   +KNET   LF Y+
Sbjct: 213 CESIRKGAFEKNETFDDLFEYE 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,005,373
Number of Sequences: 27780
Number of extensions: 295729
Number of successful extensions: 572
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)