Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00867
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   7.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   7.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.5  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 530 SGEALFQIKKHVLRFS 483
           +GE   +IKKH ++F+
Sbjct: 169 NGETYLRIKKHAVKFN 184


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 82  SQHTGSENRYQDSLPHHCNKET 17
           SQ     N+ +    HHCN++T
Sbjct: 51  SQPHQDHNKEKSKNNHHCNQDT 72


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 17/63 (26%), Positives = 24/63 (38%)
 Frame = -2

Query: 721  TVQSVCLGQSVWQGESLRMNLISDSAMFAGVGVEHSSRDFTIQEVISSTFAHFSTRLKLL 542
            T++   L   V    S++    SDSA+F  V       D T   +I          LK+L
Sbjct: 826  TIREEILANGVLSDLSIKRTERSDSALFTCVATNAFGSDDTSINMIVQEVPEVPYGLKVL 885

Query: 541  ADS 533
              S
Sbjct: 886  DKS 888


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,780
Number of Sequences: 438
Number of extensions: 3974
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)