Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00866
         (299 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    23   7.3  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    23   9.6  

>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 152 LELVRQHSVSGTLLLHFSVDSMRSHAFRKNVVL 54
           LE + QH   G  LL   ++    H FR   VL
Sbjct: 229 LETLSQHPDCGLQLLPCGMNYFHPHRFRSRAVL 261


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1077

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +1

Query: 82   LLIESTEKCNNKVPDTECCRTNSSTHYYTV 171
            L + S  KCN    D E   T  S  YY V
Sbjct: 1032 LTVASVTKCNGLEEDLEELCTLKSNDYYEV 1061


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 971,702
Number of Sequences: 5004
Number of extensions: 15405
Number of successful extensions: 31
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)