Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00866
         (299 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical pr...    29   0.47 
Z54236-6|CAA90981.3|  465|Caenorhabditis elegans Hypothetical pr...    26   5.8  
AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom...    25   7.6  

>U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical
           protein K02G10.5 protein.
          Length = 655

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 117 FVVAFLCGFYEKSCVSQKCSTFDA 46
           +++   C +++K CVSQKC  ++A
Sbjct: 571 YIIDVNCMYWQKDCVSQKCQFYNA 594


>Z54236-6|CAA90981.3|  465|Caenorhabditis elegans Hypothetical
           protein C27B7.6 protein.
          Length = 465

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 146 LVRQHSVSGTLLLHFSVDSMRSHAFRKNVVLLMLF 42
           ++R H +    + H  + SM+ H F  +  LL +F
Sbjct: 248 IIRAHEMKEVYVFHLYLSSMKGHTFEFDNRLLTVF 282


>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts homolog)
            family protein 6 protein.
          Length = 1186

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 115  KVPDTECCRTNSSTHYYTV 171
            K+ D   CRT  STHY+++
Sbjct: 1062 KISDDLACRTFFSTHYHSI 1080


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,350,363
Number of Sequences: 27780
Number of extensions: 89398
Number of successful extensions: 241
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)